Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 AY702102-202ENSMUST00000194651 1173 ntBASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Gm3052-202ENSMUST00000188254 2224 ntBASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Gm8793-201ENSMUST00000183069 1303 ntBASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Gm5638-201ENSMUST00000118618 1258 ntBASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Gm11591-201ENSMUST00000120063 702 ntBASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Gm25261-201ENSMUST00000157416 134 ntBASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Gm27514-201ENSMUST00000183692 110 ntBASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Gm6652-201ENSMUST00000186414 1070 ntBASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Gm27194-201ENSMUST00000175753 2936 ntBASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
Upf3bQ3ULL6 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.23
Upf3bQ3ULL6 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Gm43045-201ENSMUST00000198725 2095 ntBASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 AC131068.2-201ENSMUST00000226175 1453 ntBASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Trav4d-2-201ENSMUST00000120914 335 ntBASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Gm16379-201ENSMUST00000161469 348 ntBASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Gm6222-202ENSMUST00000182143 629 ntBASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Gm8762-201ENSMUST00000193486 339 ntBASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 AC153962.4-201ENSMUST00000217878 242 ntBASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 n-R5s195-201ENSMUST00000082891 119 ntBASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
Upf3bQ3ULL6 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 69.2 ms