Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 Gm12314-201ENSMUST00000118104 538 ntBASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 Gm5863-201ENSMUST00000121760 1008 ntBASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 Gm24749-201ENSMUST00000157838 343 ntBASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 Gm32999-201ENSMUST00000192693 562 ntBASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 Gm10076-201ENSMUST00000073238 384 ntBASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3aQ3ULJ3 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.27
Upf3aQ3ULJ3 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
Upf3aQ3ULJ3 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Gm45003-201ENSMUST00000205875 2158 ntBASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Gm12201-201ENSMUST00000120657 1234 ntBASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Gm27552-201ENSMUST00000183351 62 ntBASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Gm27844-201ENSMUST00000183613 62 ntBASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Aprt-ps-201ENSMUST00000212311 505 ntBASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Gm5884-201ENSMUST00000036712 1479 ntBASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3aQ3ULJ3 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 AC121805.2-201ENSMUST00000218808 2538 ntBASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Gm11331-201ENSMUST00000119764 288 ntBASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Gm11597-201ENSMUST00000121423 964 ntBASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Gm37666-201ENSMUST00000194110 866 ntBASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Gm45598-202ENSMUST00000210719 986 ntBASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 AC138604.1-201ENSMUST00000226969 739 ntBASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3aQ3ULJ3 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 57.4 ms