Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Limch1Q3UH68 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
Limch1Q3UH68 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Limch1Q3UH68 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC15.02□□□□□ -0.01
Limch1Q3UH68 AC123834.1-201ENSMUST00000225346 2043 ntBASIC15.02□□□□□ -0.01
Limch1Q3UH68 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC15.02□□□□□ -0.01
Limch1Q3UH68 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC15.02□□□□□ -0.01
Limch1Q3UH68 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Limch1Q3UH68 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Limch1Q3UH68 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Limch1Q3UH68 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC15.01□□□□□ -0.01
Limch1Q3UH68 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Gm5620-201ENSMUST00000077991 1348 ntBASIC15.01□□□□□ -0.01
Limch1Q3UH68 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Gm8805-201ENSMUST00000117848 313 ntBASIC15.01□□□□□ -0.01
Limch1Q3UH68 Gm13813-201ENSMUST00000120998 787 ntBASIC15.01□□□□□ -0.01
Limch1Q3UH68 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Gm42627-201ENSMUST00000197347 224 ntBASIC15.01□□□□□ -0.01
Limch1Q3UH68 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 AC140406.1-201ENSMUST00000226481 465 ntBASIC15.01□□□□□ -0.01
Limch1Q3UH68 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Limch1Q3UH68 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC15□□□□□ -0.01
Limch1Q3UH68 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC15□□□□□ -0.01
Limch1Q3UH68 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC15□□□□□ -0.01
Limch1Q3UH68 Gm12291-201ENSMUST00000121627 311 ntBASIC15□□□□□ -0.01
Limch1Q3UH68 Gm13123-201ENSMUST00000122173 492 ntBASIC15□□□□□ -0.01
Limch1Q3UH68 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC15□□□□□ -0.01
Limch1Q3UH68 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC15□□□□□ -0.01
Limch1Q3UH68 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC15□□□□□ -0.01
Limch1Q3UH68 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC15□□□□□ -0.01
Limch1Q3UH68 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC15□□□□□ -0.01
Limch1Q3UH68 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC15□□□□□ -0.01
Limch1Q3UH68 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
Limch1Q3UH68 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC15□□□□□ -0.01
Limch1Q3UH68 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
Limch1Q3UH68 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC15□□□□□ -0.01
Limch1Q3UH68 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Limch1Q3UH68 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Limch1Q3UH68 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC15□□□□□ -0.01
Limch1Q3UH68 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Limch1Q3UH68 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Gm8617-201ENSMUST00000118796 2222 ntBASIC15□□□□□ -0.01
Limch1Q3UH68 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Limch1Q3UH68 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Limch1Q3UH68 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Limch1Q3UH68 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Limch1Q3UH68 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Limch1Q3UH68 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC14.99□□□□□ -0.01
Limch1Q3UH68 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Limch1Q3UH68 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Limch1Q3UH68 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Limch1Q3UH68 Gm45684-201ENSMUST00000210244 1571 ntBASIC14.99□□□□□ -0.01
Limch1Q3UH68 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Limch1Q3UH68 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 110.2 ms