Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Sox9Q04887 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Sox9Q04887 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC13.15□□□□□ -0.3
Sox9Q04887 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC13.15□□□□□ -0.3
Sox9Q04887 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
Sox9Q04887 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
Sox9Q04887 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC13.15□□□□□ -0.3
Sox9Q04887 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Sox9Q04887 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC13.15□□□□□ -0.3
Sox9Q04887 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
Sox9Q04887 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC13.15□□□□□ -0.3
Sox9Q04887 Gm5616-201ENSMUST00000165252 384 ntBASIC13.15□□□□□ -0.3
Sox9Q04887 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Sox9Q04887 Gm8018-201ENSMUST00000173536 789 ntBASIC13.15□□□□□ -0.3
Sox9Q04887 Gm8741-201ENSMUST00000174736 384 ntBASIC13.15□□□□□ -0.3
Sox9Q04887 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC13.15□□□□□ -0.3
Sox9Q04887 Gm37246-201ENSMUST00000192665 835 ntBASIC13.15□□□□□ -0.3
Sox9Q04887 Gm3028-201ENSMUST00000213805 1119 ntBASIC13.15□□□□□ -0.3
Sox9Q04887 Gm21027-201ENSMUST00000219300 1236 ntBASIC13.15□□□□□ -0.3
Sox9Q04887 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
Sox9Q04887 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC13.15□□□□□ -0.3
Sox9Q04887 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC13.15□□□□□ -0.3
Sox9Q04887 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Sox9Q04887 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Sox9Q04887 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
Sox9Q04887 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Gm28182-201ENSMUST00000188354 2477 ntBASIC13.14□□□□□ -0.31
Sox9Q04887 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC13.14□□□□□ -0.31
Sox9Q04887 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Sox9Q04887 Gm12501-201ENSMUST00000119163 529 ntBASIC13.14□□□□□ -0.31
Sox9Q04887 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC13.14□□□□□ -0.31
Sox9Q04887 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC13.14□□□□□ -0.31
Sox9Q04887 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 2610027F03Rik-202ENSMUST00000186982 603 ntTSL 5 BASIC13.14□□□□□ -0.31
Sox9Q04887 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC13.14□□□□□ -0.31
Sox9Q04887 Gm9463-201ENSMUST00000206707 601 ntBASIC13.14□□□□□ -0.31
Sox9Q04887 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC13.14□□□□□ -0.31
Sox9Q04887 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Sox9Q04887 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Olfr1230-201ENSMUST00000099787 918 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Sox9Q04887 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
Sox9Q04887 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
Sox9Q04887 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Sox9Q04887 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Sox9Q04887 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Sox9Q04887 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Sox9Q04887 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 91.2 ms