Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ercc3P49135 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ercc3P49135 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ercc3P49135 Gm44241-201ENSMUST00000203230 1662 ntBASIC15.15■□□□□ 0.02
Ercc3P49135 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ercc3P49135 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ercc3P49135 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Ercc3P49135 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ercc3P49135 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC15.15■□□□□ 0.02
Ercc3P49135 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ercc3P49135 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ercc3P49135 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ercc3P49135 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ercc3P49135 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ercc3P49135 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC15.14■□□□□ 0.01
Ercc3P49135 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ercc3P49135 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ercc3P49135 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ercc3P49135 Gm12502-201ENSMUST00000120197 444 ntBASIC15.14■□□□□ 0.01
Ercc3P49135 Gm8738-201ENSMUST00000172606 329 ntBASIC15.14■□□□□ 0.01
Ercc3P49135 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC15.14■□□□□ 0.01
Ercc3P49135 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
Ercc3P49135 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC15.14■□□□□ 0.01
Ercc3P49135 Gm38158-201ENSMUST00000194617 339 ntBASIC15.14■□□□□ 0.01
Ercc3P49135 Ighv8-10-201ENSMUST00000199579 358 ntBASIC15.14■□□□□ 0.01
Ercc3P49135 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC15.14■□□□□ 0.01
Ercc3P49135 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ercc3P49135 Gm19309-201ENSMUST00000218295 205 ntBASIC15.14■□□□□ 0.01
Ercc3P49135 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ercc3P49135 Mir339-201ENSMUST00000083659 96 ntBASIC15.14■□□□□ 0.01
Ercc3P49135 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ercc3P49135 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ercc3P49135 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ercc3P49135 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ercc3P49135 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Ercc3P49135 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ercc3P49135 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ercc3P49135 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ercc3P49135 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC15.13■□□□□ 0.01
Ercc3P49135 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Ercc3P49135 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC15.13■□□□□ 0.01
Ercc3P49135 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC15.13■□□□□ 0.01
Ercc3P49135 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 Trav4d-2-201ENSMUST00000120914 335 ntBASIC15.13■□□□□ 0.01
Ercc3P49135 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC15.13■□□□□ 0.01
Ercc3P49135 Gm44974-201ENSMUST00000206387 1279 ntBASIC15.13■□□□□ 0.01
Ercc3P49135 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC15.13■□□□□ 0.01
Ercc3P49135 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Ercc3P49135 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC15.13■□□□□ 0.01
Ercc3P49135 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ercc3P49135 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Ercc3P49135 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ercc3P49135 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ercc3P49135 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ercc3P49135 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ercc3P49135 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ercc3P49135 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ercc3P49135 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Ercc3P49135 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ercc3P49135 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ercc3P49135 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ercc3P49135 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ercc3P49135 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ercc3P49135 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC15.12■□□□□ 0.01
Ercc3P49135 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC15.12■□□□□ 0.01
Ercc3P49135 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC15.12■□□□□ 0.01
Ercc3P49135 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC15.12■□□□□ 0.01
Ercc3P49135 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC15.12■□□□□ 0.01
Ercc3P49135 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Ercc3P49135 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC15.12■□□□□ 0.01
Ercc3P49135 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC15.12■□□□□ 0.01
Ercc3P49135 Gm43133-201ENSMUST00000197472 463 ntBASIC15.12■□□□□ 0.01
Ercc3P49135 Gm6007-201ENSMUST00000208170 823 ntBASIC15.12■□□□□ 0.01
Ercc3P49135 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC15.12■□□□□ 0.01
Ercc3P49135 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ercc3P49135 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ercc3P49135 AC241621.2-201ENSMUST00000223991 2151 ntBASIC15.12■□□□□ 0.01
Ercc3P49135 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ercc3P49135 Gm3052-202ENSMUST00000188254 2224 ntBASIC15.12■□□□□ 0.01
Ercc3P49135 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ercc3P49135 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ercc3P49135 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
Ercc3P49135 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ercc3P49135 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 55.2 ms