Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col2a1P28481 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col2a1P28481 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC14.28□□□□□ -0.12
Col2a1P28481 Matn2-206ENSMUST00000228570 2798 ntBASIC14.28□□□□□ -0.12
Col2a1P28481 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col2a1P28481 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Col2a1P28481 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC14.28□□□□□ -0.12
Col2a1P28481 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col2a1P28481 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col2a1P28481 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Col2a1P28481 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col2a1P28481 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Col2a1P28481 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col2a1P28481 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Col2a1P28481 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col2a1P28481 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col2a1P28481 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col2a1P28481 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col2a1P28481 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col2a1P28481 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Col2a1P28481 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col2a1P28481 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col2a1P28481 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Col2a1P28481 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC14.27□□□□□ -0.12
Col2a1P28481 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC14.27□□□□□ -0.12
Col2a1P28481 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC14.27□□□□□ -0.12
Col2a1P28481 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col2a1P28481 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
Col2a1P28481 Gm6039-201ENSMUST00000121667 1250 ntBASIC14.27□□□□□ -0.12
Col2a1P28481 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC14.27□□□□□ -0.12
Col2a1P28481 Gm44711-201ENSMUST00000205414 1264 ntBASIC14.27□□□□□ -0.12
Col2a1P28481 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Col2a1P28481 AC241621.2-201ENSMUST00000223991 2151 ntBASIC14.27□□□□□ -0.13
Col2a1P28481 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col2a1P28481 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col2a1P28481 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col2a1P28481 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Col2a1P28481 Gm18782-201ENSMUST00000209023 1399 ntBASIC14.27□□□□□ -0.13
Col2a1P28481 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col2a1P28481 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC14.27□□□□□ -0.13
Col2a1P28481 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Col2a1P28481 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col2a1P28481 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
Col2a1P28481 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC14.26□□□□□ -0.13
Col2a1P28481 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Col2a1P28481 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC14.26□□□□□ -0.13
Col2a1P28481 Gm6335-201ENSMUST00000118081 1194 ntBASIC14.26□□□□□ -0.13
Col2a1P28481 Gm13045-201ENSMUST00000119019 712 ntBASIC14.26□□□□□ -0.13
Col2a1P28481 Gm7816-201ENSMUST00000119884 1194 ntBASIC14.26□□□□□ -0.13
Col2a1P28481 Gm11450-201ENSMUST00000121144 333 ntBASIC14.26□□□□□ -0.13
Col2a1P28481 Gm15542-201ENSMUST00000121585 1194 ntBASIC14.26□□□□□ -0.13
Col2a1P28481 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC14.26□□□□□ -0.13
Col2a1P28481 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC14.26□□□□□ -0.13
Col2a1P28481 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC14.26□□□□□ -0.13
Col2a1P28481 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC14.26□□□□□ -0.13
Col2a1P28481 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC14.26□□□□□ -0.13
Col2a1P28481 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC14.26□□□□□ -0.13
Col2a1P28481 Gm8343-201ENSMUST00000182705 994 ntBASIC14.26□□□□□ -0.13
Col2a1P28481 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC14.26□□□□□ -0.13
Col2a1P28481 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Col2a1P28481 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Col2a1P28481 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 AC123834.1-201ENSMUST00000225346 2043 ntBASIC14.26□□□□□ -0.13
Col2a1P28481 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Col2a1P28481 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC14.26□□□□□ -0.13
Col2a1P28481 Gm43721-201ENSMUST00000199677 2313 ntBASIC14.26□□□□□ -0.13
Col2a1P28481 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Col2a1P28481 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC14.26□□□□□ -0.13
Col2a1P28481 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col2a1P28481 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col2a1P28481 Gm26286-201ENSMUST00000104166 134 ntBASIC14.25□□□□□ -0.13
Col2a1P28481 Gm13035-201ENSMUST00000117496 342 ntBASIC14.25□□□□□ -0.13
Col2a1P28481 Gm11331-201ENSMUST00000119764 288 ntBASIC14.25□□□□□ -0.13
Col2a1P28481 Gm12164-201ENSMUST00000121695 551 ntBASIC14.25□□□□□ -0.13
Col2a1P28481 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Col2a1P28481 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col2a1P28481 Gm8546-201ENSMUST00000178288 1264 ntBASIC14.25□□□□□ -0.13
Col2a1P28481 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col2a1P28481 Gm28071-201ENSMUST00000190355 478 ntBASIC14.25□□□□□ -0.13
Col2a1P28481 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
Col2a1P28481 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms