Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
Sdc1P18828 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
Sdc1P18828 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC10.42□□□□□ -0.74
Sdc1P18828 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC10.42□□□□□ -0.74
Sdc1P18828 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
Sdc1P18828 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC10.42□□□□□ -0.74
Sdc1P18828 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
Sdc1P18828 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
Sdc1P18828 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Gm20553-201ENSMUST00000204205 844 ntBASIC10.42□□□□□ -0.74
Sdc1P18828 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Gm7229-201ENSMUST00000214719 1007 ntBASIC10.42□□□□□ -0.74
Sdc1P18828 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Gpr146-202ENSMUST00000053120 1040 ntBASIC10.42□□□□□ -0.74
Sdc1P18828 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Gm26035-201ENSMUST00000083065 308 ntBASIC10.42□□□□□ -0.74
Sdc1P18828 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC10.42□□□□□ -0.74
Sdc1P18828 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC10.42□□□□□ -0.74
Sdc1P18828 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 AC126257.2-201ENSMUST00000215507 2300 ntBASIC10.42□□□□□ -0.74
Sdc1P18828 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
Sdc1P18828 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC10.42□□□□□ -0.74
Sdc1P18828 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC10.42□□□□□ -0.74
Sdc1P18828 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC10.42□□□□□ -0.74
Sdc1P18828 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
Sdc1P18828 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
Sdc1P18828 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC10.42□□□□□ -0.74
Sdc1P18828 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Sdc1P18828 Magel2-201ENSMUST00000080403 4631 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
Sdc1P18828 Plagl2-201ENSMUST00000056924 5485 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Nlrp6-203ENSMUST00000183845 4436 ntAPPRIS P2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
Sdc1P18828 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Tas1r2-201ENSMUST00000030510 3047 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
Sdc1P18828 Gm12537-201ENSMUST00000119266 1002 ntBASIC10.41□□□□□ -0.74
Sdc1P18828 Gm12070-201ENSMUST00000119551 1002 ntBASIC10.41□□□□□ -0.74
Sdc1P18828 Gm12671-201ENSMUST00000119978 1002 ntBASIC10.41□□□□□ -0.74
Sdc1P18828 Gm13292-201ENSMUST00000120014 1000 ntBASIC10.41□□□□□ -0.74
Sdc1P18828 Gm12403-201ENSMUST00000121384 959 ntBASIC10.41□□□□□ -0.74
Sdc1P18828 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC10.41□□□□□ -0.74
Sdc1P18828 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC10.41□□□□□ -0.74
Sdc1P18828 Gm9719-201ENSMUST00000162765 543 ntBASIC10.41□□□□□ -0.74
Sdc1P18828 Mir5126-201ENSMUST00000175513 77 ntBASIC10.41□□□□□ -0.74
Sdc1P18828 Gm10359-201ENSMUST00000180167 1002 ntBASIC10.41□□□□□ -0.74
Sdc1P18828 Gm12033-201ENSMUST00000180654 1002 ntBASIC10.41□□□□□ -0.74
Sdc1P18828 Gm5559-201ENSMUST00000180755 1002 ntBASIC10.41□□□□□ -0.74
Sdc1P18828 Gm4335-201ENSMUST00000182581 1004 ntBASIC10.41□□□□□ -0.74
Sdc1P18828 Gm42599-201ENSMUST00000201308 469 ntBASIC10.41□□□□□ -0.74
Sdc1P18828 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC10.41□□□□□ -0.74
Sdc1P18828 Gm18206-201ENSMUST00000207027 926 ntBASIC10.41□□□□□ -0.74
Sdc1P18828 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC10.41□□□□□ -0.74
Sdc1P18828 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC10.41□□□□□ -0.74
Sdc1P18828 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC10.41□□□□□ -0.74
Sdc1P18828 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
Sdc1P18828 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Tex2-201ENSMUST00000042780 4934 ntAPPRIS P2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC10.41□□□□□ -0.74
Sdc1P18828 Cdnf-201ENSMUST00000036350 3013 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC10.41□□□□□ -0.74
Sdc1P18828 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC10.41□□□□□ -0.74
Sdc1P18828 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Sdc1P18828 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC10.4□□□□□ -0.74
Sdc1P18828 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Sdc1P18828 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms