Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col1a1P11087 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
Col1a1P11087 Gm24891-201ENSMUST00000104391 136 ntBASIC14.75□□□□□ -0.05
Col1a1P11087 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC14.75□□□□□ -0.05
Col1a1P11087 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC14.75□□□□□ -0.05
Col1a1P11087 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC14.75□□□□□ -0.05
Col1a1P11087 Gm8343-201ENSMUST00000182705 994 ntBASIC14.75□□□□□ -0.05
Col1a1P11087 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col1a1P11087 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col1a1P11087 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC14.75□□□□□ -0.05
Col1a1P11087 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC14.75□□□□□ -0.05
Col1a1P11087 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col1a1P11087 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Col1a1P11087 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col1a1P11087 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col1a1P11087 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC14.74□□□□□ -0.05
Col1a1P11087 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Gm9924-202ENSMUST00000192760 2311 ntBASIC14.74□□□□□ -0.05
Col1a1P11087 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC14.74□□□□□ -0.05
Col1a1P11087 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC14.74□□□□□ -0.05
Col1a1P11087 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC14.74□□□□□ -0.05
Col1a1P11087 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC14.74□□□□□ -0.05
Col1a1P11087 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC14.74□□□□□ -0.05
Col1a1P11087 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC14.74□□□□□ -0.05
Col1a1P11087 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Col1a1P11087 Gm38210-201ENSMUST00000191944 809 ntBASIC14.74□□□□□ -0.05
Col1a1P11087 Gm2965-201ENSMUST00000198365 343 ntBASIC14.74□□□□□ -0.05
Col1a1P11087 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Gm45398-201ENSMUST00000210561 165 ntBASIC14.74□□□□□ -0.05
Col1a1P11087 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC14.74□□□□□ -0.05
Col1a1P11087 AC153954.1-201ENSMUST00000216959 255 ntBASIC14.74□□□□□ -0.05
Col1a1P11087 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col1a1P11087 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC14.74□□□□□ -0.05
Col1a1P11087 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Col1a1P11087 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Gm45342-201ENSMUST00000210903 1363 ntBASIC14.73□□□□□ -0.05
Col1a1P11087 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Col1a1P11087 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Gm16397-201ENSMUST00000122201 494 ntBASIC14.73□□□□□ -0.05
Col1a1P11087 Gm22138-201ENSMUST00000158748 128 ntBASIC14.73□□□□□ -0.05
Col1a1P11087 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC14.73□□□□□ -0.05
Col1a1P11087 Gm8100-201ENSMUST00000182906 988 ntBASIC14.73□□□□□ -0.05
Col1a1P11087 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC14.73□□□□□ -0.05
Col1a1P11087 Ighv1-48-201ENSMUST00000191795 294 ntBASIC14.73□□□□□ -0.05
Col1a1P11087 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC14.73□□□□□ -0.05
Col1a1P11087 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
Col1a1P11087 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC14.73□□□□□ -0.05
Col1a1P11087 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC14.73□□□□□ -0.05
Col1a1P11087 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC14.73□□□□□ -0.05
Col1a1P11087 AC154290.1-201ENSMUST00000223786 1240 ntBASIC14.73□□□□□ -0.05
Col1a1P11087 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.73□□□□□ -0.05
Col1a1P11087 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC14.73□□□□□ -0.05
Col1a1P11087 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Gm44891-201ENSMUST00000208817 2223 ntBASIC14.73□□□□□ -0.05
Col1a1P11087 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Col1a1P11087 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC14.73□□□□□ -0.05
Col1a1P11087 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col1a1P11087 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col1a1P11087 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Col1a1P11087 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Col1a1P11087 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 63.8 ms