Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Gm15544-201ENSMUST00000118776 1531 ntBASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Trim3Q9R1R2 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 AC096628.2-201ENSMUST00000225443 1413 ntBASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Gm22331-201ENSMUST00000158066 136 ntBASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Mir7085-201ENSMUST00000184353 66 ntBASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC12.05□□□□□ -0.48
Trim3Q9R1R2 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Abhd6-203ENSMUST00000225234 1958 ntBASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Gm18630-201ENSMUST00000222109 1397 ntBASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
Trim3Q9R1R2 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 AC155237.1-201ENSMUST00000226196 1279 ntBASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Gm43417-201ENSMUST00000201586 5207 ntBASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Trim3Q9R1R2 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Trim3Q9R1R2 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms