Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 AC165260.3-202ENSMUST00000224550 1031 ntBASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Cpsf3Q9QXK7 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Gm3287-205ENSMUST00000228893 1332 ntBASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Gm10608-202ENSMUST00000213924 676 ntBASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 AC167013.1-201ENSMUST00000228592 202 ntBASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cpsf3Q9QXK7 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Gm3052-202ENSMUST00000188254 2224 ntBASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Gm13297-201ENSMUST00000120205 934 ntBASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Gm5904-201ENSMUST00000210286 865 ntBASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 AC093022.5-201ENSMUST00000226841 1079 ntBASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Gm22058-201ENSMUST00000083393 310 ntBASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cpsf3Q9QXK7 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cpsf3Q9QXK7 Gm7789-202ENSMUST00000211273 1400 ntBASIC13.71□□□□□ -0.22
Cpsf3Q9QXK7 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.22
Cpsf3Q9QXK7 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC13.71□□□□□ -0.22
Cpsf3Q9QXK7 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Cpsf3Q9QXK7 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC13.71□□□□□ -0.22
Cpsf3Q9QXK7 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cpsf3Q9QXK7 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cpsf3Q9QXK7 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC13.7□□□□□ -0.22
Cpsf3Q9QXK7 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Cpsf3Q9QXK7 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Cpsf3Q9QXK7 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC13.7□□□□□ -0.22
Cpsf3Q9QXK7 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC13.7□□□□□ -0.22
Cpsf3Q9QXK7 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cpsf3Q9QXK7 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cpsf3Q9QXK7 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cpsf3Q9QXK7 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 72.4 ms