Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Ror2-202ENSMUST00000130235 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Gm43931-201ENSMUST00000204817 2870 ntBASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Trpv1-203ENSMUST00000108470 2667 ntTSL 5 BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Casc1-203ENSMUST00000111728 2682 ntAPPRIS ALT2 TSL 2 BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 AA543401-201ENSMUST00000164248 1269 ntBASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Gm10231-201ENSMUST00000181584 441 ntBASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Gm27357-201ENSMUST00000183754 135 ntBASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Gm10175-202ENSMUST00000208752 441 ntBASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 AC154305.4-201ENSMUST00000224520 614 ntBASIC10.18□□□□□ -0.78
Smco4Q9JIS3 AC169036.1-201ENSMUST00000227994 296 ntBASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Olfr46-203ENSMUST00000214180 7750 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Igsf1-204ENSMUST00000114893 2671 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Smco4Q9JIS3 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Myh13-201ENSMUST00000081911 5817 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 4632404M16Rik-201ENSMUST00000197326 2882 ntBASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Gm38140-201ENSMUST00000193617 2755 ntBASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Gm26660-202ENSMUST00000223620 4112 ntBASIC10.17□□□□□ -0.78
Smco4Q9JIS3 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Kat6b-204ENSMUST00000182405 6977 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Gm38292-201ENSMUST00000192646 3045 ntBASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Gm15173-201ENSMUST00000122049 433 ntBASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC10.17□□□□□ -0.78
Smco4Q9JIS3 AC166997.1-201ENSMUST00000225122 572 ntBASIC10.17□□□□□ -0.78
Smco4Q9JIS3 AC121598.1-201ENSMUST00000228224 1019 ntBASIC10.17□□□□□ -0.78
Smco4Q9JIS3 AC131997.1-201ENSMUST00000228611 1229 ntBASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 4930463O16Rik-201ENSMUST00000020222 2088 ntTSL 2 BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Rbm47-205ENSMUST00000167950 4895 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Slc6a18-201ENSMUST00000022105 2839 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 AC114543.1-201ENSMUST00000226451 1558 ntBASIC10.17□□□□□ -0.78
Smco4Q9JIS3 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Csf1-201ENSMUST00000014743 4176 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Rhoj-203ENSMUST00000118966 4892 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Ntng2-202ENSMUST00000071201 1881 ntTSL 5 BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Smco4Q9JIS3 Vcan-202ENSMUST00000109544 5702 ntTSL 5 BASIC10.16□□□□□ -0.78
Smco4Q9JIS3 Gm37613-201ENSMUST00000195677 3580 ntBASIC10.16□□□□□ -0.78
Smco4Q9JIS3 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC10.16□□□□□ -0.78
Smco4Q9JIS3 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms