Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Gm43133-201ENSMUST00000197472 463 ntBASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 CU024892.2-201ENSMUST00000224608 832 ntBASIC13.11□□□□□ -0.31
Vps28Q9D1C8 AC154462.2-201ENSMUST00000227519 370 ntBASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Gm44401-201ENSMUST00000204462 2375 ntBASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Gm42853-201ENSMUST00000201273 1387 ntBASIC13.1□□□□□ -0.31
Vps28Q9D1C8 AC164107.1-201ENSMUST00000227730 2161 ntBASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 AC137842.1-201ENSMUST00000227896 2064 ntBASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Gm5940-201ENSMUST00000117582 1068 ntBASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Gm9431-201ENSMUST00000119765 1051 ntBASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Gm8099-201ENSMUST00000200510 742 ntBASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Gm43416-201ENSMUST00000201916 1015 ntBASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 AC166051.1-201ENSMUST00000214313 210 ntBASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Gm32025-201ENSMUST00000217960 307 ntBASIC13.1□□□□□ -0.31
Vps28Q9D1C8 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 AC069562.3-201ENSMUST00000225387 587 ntBASIC13.1□□□□□ -0.31
Vps28Q9D1C8 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Gm7399-201ENSMUST00000032395 858 ntBASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Vps28Q9D1C8 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Gm8798-201ENSMUST00000211877 1661 ntBASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Gm6023-201ENSMUST00000118217 606 ntBASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Gm3890-201ENSMUST00000182416 207 ntBASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Gm42627-201ENSMUST00000197347 224 ntBASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Gm18584-201ENSMUST00000203098 964 ntBASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Vps28Q9D1C8 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms