Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vps53Q8CCB4 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Mir3102-201ENSMUST00000175555 104 ntBASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Gm4857-201ENSMUST00000192718 785 ntBASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vps53Q8CCB4 Gm44851-201ENSMUST00000205735 2309 ntBASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 AC151895.1-201ENSMUST00000219025 1742 ntBASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Gm6447-201ENSMUST00000118905 835 ntBASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Gm26927-201ENSMUST00000182385 965 ntBASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Gm18827-201ENSMUST00000188341 790 ntBASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Gm5620-201ENSMUST00000077991 1348 ntBASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vps53Q8CCB4 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Gm10040-201ENSMUST00000080726 1662 ntBASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Gm13369-201ENSMUST00000119442 987 ntBASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Gm37497-201ENSMUST00000195830 798 ntBASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Gm18935-201ENSMUST00000212692 664 ntBASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Gm24526-201ENSMUST00000082921 158 ntBASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vps53Q8CCB4 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms