Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm13394-201ENSMUST00000121658 1000 ntBASIC15.05■□□□□ -0
Trim56Q80VI1 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC15.05■□□□□ -0
Trim56Q80VI1 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC15.05■□□□□ -0
Trim56Q80VI1 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trim56Q80VI1 Gm8176-201ENSMUST00000191297 1099 ntBASIC15.05■□□□□ -0
Trim56Q80VI1 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC15.05■□□□□ -0
Trim56Q80VI1 Gm6621-201ENSMUST00000193251 772 ntBASIC15.05■□□□□ -0
Trim56Q80VI1 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC15.05■□□□□ -0
Trim56Q80VI1 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim56Q80VI1 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim56Q80VI1 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC15.05■□□□□ -0
Trim56Q80VI1 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim56Q80VI1 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trim56Q80VI1 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC15.05■□□□□ -0
Trim56Q80VI1 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trim56Q80VI1 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC15.05■□□□□ -0
Trim56Q80VI1 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Trim56Q80VI1 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Trim56Q80VI1 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ -0
Trim56Q80VI1 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trim56Q80VI1 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim56Q80VI1 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim56Q80VI1 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim56Q80VI1 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Trim56Q80VI1 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Trim56Q80VI1 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Trim56Q80VI1 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC15.04■□□□□ -0
Trim56Q80VI1 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC15.04■□□□□ -0
Trim56Q80VI1 Gm14723-201ENSMUST00000118686 215 ntBASIC15.04■□□□□ -0
Trim56Q80VI1 Gm5637-201ENSMUST00000153890 1119 ntBASIC15.04■□□□□ -0
Trim56Q80VI1 Mir6420-201ENSMUST00000185032 102 ntBASIC15.04■□□□□ -0
Trim56Q80VI1 Gm7895-201ENSMUST00000187459 1173 ntBASIC15.04■□□□□ -0
Trim56Q80VI1 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC15.04■□□□□ -0
Trim56Q80VI1 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC15.04■□□□□ -0
Trim56Q80VI1 Gm45865-201ENSMUST00000211815 945 ntBASIC15.04■□□□□ -0
Trim56Q80VI1 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim56Q80VI1 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC15.04■□□□□ -0
Trim56Q80VI1 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC15.04■□□□□ -0
Trim56Q80VI1 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim56Q80VI1 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC15.04■□□□□ -0
Trim56Q80VI1 Olfr582-201ENSMUST00000098212 960 ntBASIC15.04■□□□□ -0
Trim56Q80VI1 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim56Q80VI1 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Trim56Q80VI1 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Trim56Q80VI1 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Trim56Q80VI1 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC15.04■□□□□ -0
Trim56Q80VI1 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim56Q80VI1 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC15.04■□□□□ -0
Trim56Q80VI1 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Trim56Q80VI1 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim56Q80VI1 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Trim56Q80VI1 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC15.03■□□□□ -0
Trim56Q80VI1 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Trim56Q80VI1 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
Trim56Q80VI1 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Trim56Q80VI1 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC15.03■□□□□ -0
Trim56Q80VI1 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC15.03■□□□□ -0
Trim56Q80VI1 Gm8018-201ENSMUST00000173536 789 ntBASIC15.03■□□□□ -0
Trim56Q80VI1 Gm37489-201ENSMUST00000191883 159 ntBASIC15.03■□□□□ -0
Trim56Q80VI1 Gm44405-201ENSMUST00000198952 126 ntBASIC15.03■□□□□ -0
Trim56Q80VI1 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC15.03■□□□□ -0
Trim56Q80VI1 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC15.03■□□□□ -0
Trim56Q80VI1 Gm9368-201ENSMUST00000219348 831 ntBASIC15.03■□□□□ -0
Trim56Q80VI1 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC15.03■□□□□ -0
Trim56Q80VI1 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC15.03■□□□□ -0
Trim56Q80VI1 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Trim56Q80VI1 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim56Q80VI1 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Trim56Q80VI1 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim56Q80VI1 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Trim56Q80VI1 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim56Q80VI1 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim56Q80VI1 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim56Q80VI1 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC15.02■□□□□ -0
Trim56Q80VI1 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC15.02■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms