Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Upf3bQ3ULL6 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Gm43579-201ENSMUST00000202387 1307 ntBASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 AC093022.5-201ENSMUST00000226841 1079 ntBASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Upf3bQ3ULL6 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Mir7085-201ENSMUST00000184353 66 ntBASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Gm9728-201ENSMUST00000200197 1055 ntBASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 AC166349.1-201ENSMUST00000220866 695 ntBASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Gm4935-201ENSMUST00000221316 1198 ntBASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 AC069562.3-201ENSMUST00000225387 587 ntBASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
Upf3bQ3ULL6 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Gm26616-202ENSMUST00000195676 3107 ntBASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Gm6992-201ENSMUST00000217973 1607 ntBASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Upf3bQ3ULL6 Gm5370-201ENSMUST00000187187 574 ntBASIC13.66□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms