Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col28a1Q2UY11 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Gm27892-201ENSMUST00000185017 106 ntBASIC12.44□□□□□ -0.42
Col28a1Q2UY11 AY702102-202ENSMUST00000194651 1173 ntBASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 AC139580.1-202ENSMUST00000223574 928 ntBASIC12.44□□□□□ -0.42
Col28a1Q2UY11 AC154305.4-201ENSMUST00000224520 614 ntBASIC12.44□□□□□ -0.42
Col28a1Q2UY11 AC134335.2-201ENSMUST00000227660 440 ntBASIC12.44□□□□□ -0.42
Col28a1Q2UY11 AC154276.1-201ENSMUST00000228874 1299 ntBASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Gm5161-201ENSMUST00000075243 853 ntBASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Col28a1Q2UY11 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Daam2-202ENSMUST00000224595 1926 ntBASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Gm36970-201ENSMUST00000193688 1859 ntBASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Gm4984-201ENSMUST00000115987 360 ntBASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Gm12341-201ENSMUST00000119724 503 ntBASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Gm5354-201ENSMUST00000182417 973 ntBASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Gm27701-201ENSMUST00000184498 110 ntBASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Gm28911-201ENSMUST00000188837 117 ntBASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 AC122840.1-201ENSMUST00000220915 3334 ntBASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Gm7104-201ENSMUST00000179741 2532 ntBASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col28a1Q2UY11 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Col28a1Q2UY11 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC12.42□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 83.3 ms