Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Gm3150-201ENSMUST00000166418 204 ntBASIC19.17■□□□□ 0.66
Col17a1Q07563 Gm18304-201ENSMUST00000189162 546 ntBASIC19.17■□□□□ 0.66
Col17a1Q07563 Gm8436-201ENSMUST00000210152 1080 ntBASIC19.17■□□□□ 0.66
Col17a1Q07563 Gm39288-201ENSMUST00000210554 446 ntBASIC19.17■□□□□ 0.66
Col17a1Q07563 Gm5749-201ENSMUST00000210673 1090 ntBASIC19.17■□□□□ 0.66
Col17a1Q07563 Olfr1121-201ENSMUST00000062555 945 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Col17a1Q07563 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col17a1Q07563 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col17a1Q07563 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col17a1Q07563 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Col17a1Q07563 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col17a1Q07563 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col17a1Q07563 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col17a1Q07563 Gm5421-201ENSMUST00000181698 2354 ntBASIC19.17■□□□□ 0.66
Col17a1Q07563 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col17a1Q07563 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col17a1Q07563 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col17a1Q07563 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col17a1Q07563 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Col17a1Q07563 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Col17a1Q07563 Nup188-202ENSMUST00000113634 534 ntTSL 2 BASIC19.16■□□□□ 0.66
Col17a1Q07563 Gm13094-201ENSMUST00000117930 409 ntBASIC19.16■□□□□ 0.66
Col17a1Q07563 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Col17a1Q07563 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC19.16■□□□□ 0.66
Col17a1Q07563 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Col17a1Q07563 1110020A21Rik-201ENSMUST00000181147 853 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 C630004L07Rik-201ENSMUST00000193236 1275 ntBASIC19.16■□□□□ 0.66
Col17a1Q07563 Ckb-ps2-201ENSMUST00000198886 1001 ntBASIC19.16■□□□□ 0.66
Col17a1Q07563 Gm30671-201ENSMUST00000214898 318 ntBASIC19.16■□□□□ 0.66
Col17a1Q07563 Apoa5-205ENSMUST00000215187 495 ntTSL 5 BASIC19.16■□□□□ 0.66
Col17a1Q07563 Gm32872-201ENSMUST00000220037 205 ntTSL 3 BASIC19.16■□□□□ 0.66
Col17a1Q07563 Nqo2-203ENSMUST00000220844 957 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 Gm28182-201ENSMUST00000188354 2477 ntBASIC19.16■□□□□ 0.66
Col17a1Q07563 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 Gm42432-201ENSMUST00000197902 1617 ntBASIC19.16■□□□□ 0.66
Col17a1Q07563 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Col17a1Q07563 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 Gm37297-201ENSMUST00000192974 2384 ntBASIC19.16■□□□□ 0.66
Col17a1Q07563 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Col17a1Q07563 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 Gm5780-201ENSMUST00000217774 1834 ntBASIC19.16■□□□□ 0.66
Col17a1Q07563 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 Gm9673-201ENSMUST00000119287 781 ntBASIC19.16■□□□□ 0.66
Col17a1Q07563 Gm15815-201ENSMUST00000120569 255 ntBASIC19.16■□□□□ 0.66
Col17a1Q07563 Gm26716-201ENSMUST00000181227 415 ntTSL 5 BASIC19.16■□□□□ 0.66
Col17a1Q07563 Gm27675-201ENSMUST00000184527 94 ntBASIC19.16■□□□□ 0.66
Col17a1Q07563 Gm6606-201ENSMUST00000193613 947 ntBASIC19.16■□□□□ 0.66
Col17a1Q07563 Gm44315-201ENSMUST00000203041 219 ntBASIC19.16■□□□□ 0.66
Col17a1Q07563 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 Krtap2-4-201ENSMUST00000074926 828 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Col17a1Q07563 Gm45133-201ENSMUST00000207548 2773 ntBASIC19.16■□□□□ 0.66
Col17a1Q07563 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Col17a1Q07563 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col17a1Q07563 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col17a1Q07563 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col17a1Q07563 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col17a1Q07563 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col17a1Q07563 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col17a1Q07563 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC19.15■□□□□ 0.66
Col17a1Q07563 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col17a1Q07563 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col17a1Q07563 Gm12159-201ENSMUST00000143869 1447 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col17a1Q07563 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC19.15■□□□□ 0.66
Col17a1Q07563 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Col17a1Q07563 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC19.15■□□□□ 0.66
Col17a1Q07563 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col17a1Q07563 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col17a1Q07563 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC19.15■□□□□ 0.66
Col17a1Q07563 Gm15889-202ENSMUST00000212669 2443 ntBASIC19.15■□□□□ 0.66
Col17a1Q07563 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col17a1Q07563 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col17a1Q07563 Gm23769-201ENSMUST00000104441 121 ntBASIC19.15■□□□□ 0.66
Col17a1Q07563 Psme1-208ENSMUST00000174259 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col17a1Q07563 C230062I16Rik-203ENSMUST00000208015 648 ntTSL 3 BASIC19.15■□□□□ 0.66
Col17a1Q07563 Crygf-201ENSMUST00000027082 627 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col17a1Q07563 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col17a1Q07563 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
Col17a1Q07563 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
Col17a1Q07563 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col17a1Q07563 Gm10605-202ENSMUST00000183019 3198 ntBASIC19.14■□□□□ 0.66
Col17a1Q07563 4930558J22Rik-201ENSMUST00000139822 1480 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Col17a1Q07563 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Col17a1Q07563 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col17a1Q07563 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col17a1Q07563 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col17a1Q07563 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col17a1Q07563 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC19.14■□□□□ 0.65
Col17a1Q07563 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col17a1Q07563 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col17a1Q07563 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC19.14■□□□□ 0.65
Col17a1Q07563 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms