Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC15.25■□□□□ 0.03
Rfx1P48377 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Rfx1P48377 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Rfx1P48377 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC15.24■□□□□ 0.03
Rfx1P48377 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx1P48377 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC15.24■□□□□ 0.03
Rfx1P48377 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx1P48377 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC15.24■□□□□ 0.03
Rfx1P48377 Gm27838-201ENSMUST00000184829 128 ntBASIC15.24■□□□□ 0.03
Rfx1P48377 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx1P48377 AC154527.2-201ENSMUST00000225256 1466 ntBASIC15.24■□□□□ 0.03
Rfx1P48377 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Rfx1P48377 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC15.24■□□□□ 0.03
Rfx1P48377 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx1P48377 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx1P48377 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC15.24■□□□□ 0.03
Rfx1P48377 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Rfx1P48377 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx1P48377 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Rfx1P48377 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC15.24■□□□□ 0.03
Rfx1P48377 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx1P48377 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx1P48377 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
Rfx1P48377 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Rfx1P48377 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Rfx1P48377 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
Rfx1P48377 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Rfx1P48377 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Rfx1P48377 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC15.23■□□□□ 0.03
Rfx1P48377 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC15.23■□□□□ 0.03
Rfx1P48377 Gm14350-201ENSMUST00000116642 640 ntBASIC15.23■□□□□ 0.03
Rfx1P48377 Gm16342-201ENSMUST00000124025 1025 ntBASIC15.23■□□□□ 0.03
Rfx1P48377 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Rfx1P48377 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC15.23■□□□□ 0.03
Rfx1P48377 Gm37935-201ENSMUST00000192012 982 ntBASIC15.23■□□□□ 0.03
Rfx1P48377 Gm44124-201ENSMUST00000204159 472 ntBASIC15.23■□□□□ 0.03
Rfx1P48377 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC15.23■□□□□ 0.03
Rfx1P48377 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 AC135669.1-202ENSMUST00000216742 540 ntBASIC15.23■□□□□ 0.03
Rfx1P48377 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
Rfx1P48377 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
Rfx1P48377 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
Rfx1P48377 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Rfx1P48377 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx1P48377 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Rfx1P48377 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx1P48377 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Rfx1P48377 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx1P48377 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Rfx1P48377 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx1P48377 Gm15321-201ENSMUST00000121290 288 ntBASIC15.22■□□□□ 0.03
Rfx1P48377 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC15.22■□□□□ 0.03
Rfx1P48377 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Rfx1P48377 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx1P48377 Gm38297-201ENSMUST00000195122 1057 ntBASIC15.22■□□□□ 0.03
Rfx1P48377 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx1P48377 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC15.22■□□□□ 0.03
Rfx1P48377 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx1P48377 AC156031.2-201ENSMUST00000213107 3310 ntBASIC15.22■□□□□ 0.03
Rfx1P48377 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx1P48377 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx1P48377 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC15.22■□□□□ 0.03
Rfx1P48377 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx1P48377 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx1P48377 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx1P48377 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx1P48377 Gm43365-201ENSMUST00000196522 2106 ntBASIC15.22■□□□□ 0.03
Rfx1P48377 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Rfx1P48377 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx1P48377 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Rfx1P48377 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms