Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col1a1P11087 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col1a1P11087 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col1a1P11087 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC14.78□□□□□ -0.04
Col1a1P11087 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col1a1P11087 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col1a1P11087 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col1a1P11087 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col1a1P11087 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC14.77□□□□□ -0.04
Col1a1P11087 Gm45909-201ENSMUST00000212413 1031 ntBASIC14.77□□□□□ -0.04
Col1a1P11087 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC14.77□□□□□ -0.04
Col1a1P11087 Gm807-202ENSMUST00000224929 408 ntBASIC14.77□□□□□ -0.04
Col1a1P11087 Gm6781-201ENSMUST00000038304 1242 ntBASIC14.77□□□□□ -0.04
Col1a1P11087 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Col1a1P11087 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC14.77□□□□□ -0.04
Col1a1P11087 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Col1a1P11087 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Col1a1P11087 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col1a1P11087 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col1a1P11087 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col1a1P11087 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Col1a1P11087 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col1a1P11087 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Col1a1P11087 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC14.77□□□□□ -0.04
Col1a1P11087 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Col1a1P11087 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Col1a1P11087 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col1a1P11087 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col1a1P11087 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC14.77□□□□□ -0.05
Col1a1P11087 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col1a1P11087 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col1a1P11087 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col1a1P11087 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Gm14724-201ENSMUST00000118400 537 ntBASIC14.76□□□□□ -0.05
Col1a1P11087 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC14.76□□□□□ -0.05
Col1a1P11087 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Col1a1P11087 Gm5733-201ENSMUST00000190232 939 ntBASIC14.76□□□□□ -0.05
Col1a1P11087 Gm37246-201ENSMUST00000192665 835 ntBASIC14.76□□□□□ -0.05
Col1a1P11087 Gm9463-201ENSMUST00000206707 601 ntBASIC14.76□□□□□ -0.05
Col1a1P11087 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC14.76□□□□□ -0.05
Col1a1P11087 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 CT009713.8-202ENSMUST00000224732 385 ntBASIC14.76□□□□□ -0.05
Col1a1P11087 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC14.76□□□□□ -0.05
Col1a1P11087 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC14.76□□□□□ -0.05
Col1a1P11087 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Col1a1P11087 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Col1a1P11087 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Col1a1P11087 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Ccdc163-204ENSMUST00000106464 1213 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
Col1a1P11087 Gm12795-201ENSMUST00000117594 539 ntBASIC14.76□□□□□ -0.05
Col1a1P11087 Gm8199-201ENSMUST00000121323 823 ntBASIC14.76□□□□□ -0.05
Col1a1P11087 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC14.76□□□□□ -0.05
Col1a1P11087 Gm3332-201ENSMUST00000189337 928 ntBASIC14.76□□□□□ -0.05
Col1a1P11087 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col1a1P11087 Gm26448-201ENSMUST00000082446 203 ntBASIC14.76□□□□□ -0.05
Col1a1P11087 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col1a1P11087 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col1a1P11087 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col1a1P11087 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col1a1P11087 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC14.75□□□□□ -0.05
Col1a1P11087 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col1a1P11087 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col1a1P11087 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Col1a1P11087 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Col1a1P11087 Gm28719-201ENSMUST00000187779 1757 ntBASIC14.75□□□□□ -0.05
Col1a1P11087 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col1a1P11087 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC14.75□□□□□ -0.05
Col1a1P11087 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Col1a1P11087 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col1a1P11087 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col1a1P11087 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col1a1P11087 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC14.75□□□□□ -0.05
Col1a1P11087 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
Col1a1P11087 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC14.75□□□□□ -0.05
Col1a1P11087 AC091458.1-201ENSMUST00000220902 1361 ntBASIC14.75□□□□□ -0.05
Col1a1P11087 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 62.9 ms