Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Mir7221-201ENSMUST00000184009 72 ntBASIC10.08□□□□□ -0.8
Hoxd3P09027 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC10.08□□□□□ -0.8
Hoxd3P09027 Gm38002-201ENSMUST00000193255 180 ntBASIC10.08□□□□□ -0.8
Hoxd3P09027 Gm8762-201ENSMUST00000193486 339 ntBASIC10.08□□□□□ -0.8
Hoxd3P09027 Gm43058-201ENSMUST00000197645 625 ntBASIC10.08□□□□□ -0.8
Hoxd3P09027 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC10.08□□□□□ -0.8
Hoxd3P09027 Gm44552-201ENSMUST00000205458 1247 ntBASIC10.08□□□□□ -0.8
Hoxd3P09027 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Gm18054-201ENSMUST00000207539 555 ntBASIC10.08□□□□□ -0.8
Hoxd3P09027 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC10.08□□□□□ -0.8
Hoxd3P09027 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC10.08□□□□□ -0.8
Hoxd3P09027 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Gm19163-201ENSMUST00000223313 780 ntBASIC10.08□□□□□ -0.8
Hoxd3P09027 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Gm7399-201ENSMUST00000032395 858 ntBASIC10.08□□□□□ -0.8
Hoxd3P09027 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Tas2r104-201ENSMUST00000072404 909 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
Hoxd3P09027 Snora73a-201ENSMUST00000082453 205 ntBASIC10.08□□□□□ -0.8
Hoxd3P09027 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC10.08□□□□□ -0.8
Hoxd3P09027 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC10.08□□□□□ -0.8
Hoxd3P09027 Gm42853-201ENSMUST00000201273 1387 ntBASIC10.08□□□□□ -0.8
Hoxd3P09027 AC101945.2-201ENSMUST00000227886 1377 ntBASIC10.08□□□□□ -0.8
Hoxd3P09027 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 AC154725.1-201ENSMUST00000224826 1961 ntBASIC10.08□□□□□ -0.8
Hoxd3P09027 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
Hoxd3P09027 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Hoxd3P09027 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Hoxd3P09027 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Hoxd3P09027 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Gm11405-201ENSMUST00000118689 1556 ntBASIC10.07□□□□□ -0.8
Hoxd3P09027 Gm15897-201ENSMUST00000117770 1486 ntBASIC10.07□□□□□ -0.8
Hoxd3P09027 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC10.07□□□□□ -0.8
Hoxd3P09027 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC10.07□□□□□ -0.8
Hoxd3P09027 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Gm2012-202ENSMUST00000163263 892 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Hoxd3P09027 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Gm28180-201ENSMUST00000189608 722 ntBASIC10.07□□□□□ -0.8
Hoxd3P09027 Gm18692-201ENSMUST00000193047 511 ntBASIC10.07□□□□□ -0.8
Hoxd3P09027 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC10.07□□□□□ -0.8
Hoxd3P09027 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Gm4768-201ENSMUST00000206199 686 ntBASIC10.07□□□□□ -0.8
Hoxd3P09027 Gm44554-201ENSMUST00000208738 147 ntBASIC10.07□□□□□ -0.8
Hoxd3P09027 AC159896.2-201ENSMUST00000214753 269 ntBASIC10.07□□□□□ -0.8
Hoxd3P09027 AC154319.1-201ENSMUST00000216330 312 ntBASIC10.07□□□□□ -0.8
Hoxd3P09027 AC153529.1-201ENSMUST00000217818 370 ntBASIC10.07□□□□□ -0.8
Hoxd3P09027 AC131743.3-201ENSMUST00000222099 662 ntBASIC10.07□□□□□ -0.8
Hoxd3P09027 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC10.07□□□□□ -0.8
Hoxd3P09027 AL589735.1-201ENSMUST00000224353 270 ntBASIC10.07□□□□□ -0.8
Hoxd3P09027 AC140406.1-201ENSMUST00000226481 465 ntBASIC10.07□□□□□ -0.8
Hoxd3P09027 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 BC028528-201ENSMUST00000036360 752 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Olfr938-201ENSMUST00000056499 1190 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
Hoxd3P09027 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC10.07□□□□□ -0.8
Hoxd3P09027 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
Hoxd3P09027 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Hoxd3P09027 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC10.07□□□□□ -0.8
Hoxd3P09027 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
Hoxd3P09027 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Hoxd3P09027 AC153962.3-202ENSMUST00000217778 1412 ntTSL 5 BASIC10.07□□□□□ -0.8
Hoxd3P09027 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Hoxd3P09027 AC163296.2-201ENSMUST00000220177 1315 ntBASIC10.07□□□□□ -0.8
Hoxd3P09027 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC10.07□□□□□ -0.8
Hoxd3P09027 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 67.4 ms