Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Gm16570-201ENSMUST00000161951 436 ntBASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Gm43133-201ENSMUST00000197472 463 ntBASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Ighv8-10-201ENSMUST00000199579 358 ntBASIC14.36□□□□□ -0.11
Ushbp1Q8R370 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 AC093022.1-201ENSMUST00000226949 1072 ntBASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Ushbp1Q8R370 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Cts7-204ENSMUST00000225321 1257 ntBASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Gm26616-202ENSMUST00000195676 3107 ntBASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC14.35□□□□□ -0.11
Ushbp1Q8R370 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Gm8805-201ENSMUST00000117848 313 ntBASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Gm11793-201ENSMUST00000120433 981 ntBASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Gm12539-201ENSMUST00000121549 1098 ntBASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Gm29199-201ENSMUST00000187766 775 ntBASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Gm38341-201ENSMUST00000195357 515 ntBASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Gm6334-201ENSMUST00000207083 228 ntBASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Gm9368-201ENSMUST00000219348 831 ntBASIC14.34□□□□□ -0.11
Ushbp1Q8R370 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Snora73a-201ENSMUST00000082453 205 ntBASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ushbp1Q8R370 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ushbp1Q8R370 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Ushbp1Q8R370 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC14.33□□□□□ -0.11
Ushbp1Q8R370 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ushbp1Q8R370 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ushbp1Q8R370 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ushbp1Q8R370 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ushbp1Q8R370 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms