Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp47Q8BY87 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp47Q8BY87 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp47Q8BY87 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp47Q8BY87 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC17.98■□□□□ 0.47
Usp47Q8BY87 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp47Q8BY87 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp47Q8BY87 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Usp47Q8BY87 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp47Q8BY87 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp47Q8BY87 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp47Q8BY87 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp47Q8BY87 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Usp47Q8BY87 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Gm15547-201ENSMUST00000122152 333 ntBASIC17.97■□□□□ 0.47
Usp47Q8BY87 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 AA914427-201ENSMUST00000193194 1166 ntBASIC17.97■□□□□ 0.47
Usp47Q8BY87 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Gm42937-201ENSMUST00000197360 752 ntBASIC17.97■□□□□ 0.47
Usp47Q8BY87 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Gm10371-202ENSMUST00000228010 1081 ntBASIC17.97■□□□□ 0.47
Usp47Q8BY87 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usp47Q8BY87 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usp47Q8BY87 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usp47Q8BY87 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Usp47Q8BY87 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
Usp47Q8BY87 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Gm10076-201ENSMUST00000073238 384 ntBASIC17.96■□□□□ 0.47
Usp47Q8BY87 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Gm37019-201ENSMUST00000192133 2134 ntBASIC17.96■□□□□ 0.47
Usp47Q8BY87 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
Usp47Q8BY87 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.46
Usp47Q8BY87 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Usp47Q8BY87 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
Usp47Q8BY87 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Usp47Q8BY87 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Usp47Q8BY87 Gm12012-201ENSMUST00000118857 1066 ntBASIC17.95■□□□□ 0.46
Usp47Q8BY87 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Usp47Q8BY87 Gm38317-201ENSMUST00000195564 343 ntBASIC17.95■□□□□ 0.46
Usp47Q8BY87 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC17.95■□□□□ 0.46
Usp47Q8BY87 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC17.95■□□□□ 0.46
Usp47Q8BY87 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
Usp47Q8BY87 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Usp47Q8BY87 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Usp47Q8BY87 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usp47Q8BY87 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usp47Q8BY87 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usp47Q8BY87 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Usp47Q8BY87 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Usp47Q8BY87 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC17.94■□□□□ 0.46
Usp47Q8BY87 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Usp47Q8BY87 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Usp47Q8BY87 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Usp47Q8BY87 Gm15808-201ENSMUST00000119046 604 ntBASIC17.94■□□□□ 0.46
Usp47Q8BY87 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC17.94■□□□□ 0.46
Usp47Q8BY87 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC17.94■□□□□ 0.46
Usp47Q8BY87 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Usp47Q8BY87 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Usp47Q8BY87 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC17.94■□□□□ 0.46
Usp47Q8BY87 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Usp47Q8BY87 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms