Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Gm19994-201ENSMUST00000217086 586 ntBASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 AC159308.2-201ENSMUST00000213592 2325 ntBASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Ddx55Q6ZPL9 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Gm9279-201ENSMUST00000223175 1606 ntBASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Gm13035-201ENSMUST00000117496 342 ntBASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Gm6506-201ENSMUST00000119775 1136 ntBASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Gm14665-201ENSMUST00000122294 557 ntBASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Gm19459-201ENSMUST00000176240 835 ntBASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Gm18626-201ENSMUST00000221512 1409 ntBASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Ddx55Q6ZPL9 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Gm14058-201ENSMUST00000116082 735 ntBASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Gm12165-201ENSMUST00000117047 342 ntBASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Gm15432-201ENSMUST00000121106 195 ntBASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 AC154849.4-201ENSMUST00000224868 365 ntBASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Gm28386-201ENSMUST00000189147 1849 ntBASIC14.48□□□□□ -0.09
Ddx55Q6ZPL9 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Ddx55Q6ZPL9 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ddx55Q6ZPL9 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ddx55Q6ZPL9 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ddx55Q6ZPL9 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ddx55Q6ZPL9 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ddx55Q6ZPL9 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
Ddx55Q6ZPL9 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
Ddx55Q6ZPL9 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ddx55Q6ZPL9 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Ddx55Q6ZPL9 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms