Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Usp49Q6P9L4 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Usp49Q6P9L4 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC14.33□□□□□ -0.11
Usp49Q6P9L4 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Usp49Q6P9L4 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Adra1a-206ENSMUST00000225182 2337 ntBASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Usp49Q6P9L4 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Gm44775-201ENSMUST00000207266 1456 ntBASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 n-R5s77-201ENSMUST00000083757 119 ntBASIC14.32□□□□□ -0.12
Usp49Q6P9L4 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Usp49Q6P9L4 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Gm8706-201ENSMUST00000197372 1491 ntBASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Mir1938-201ENSMUST00000158746 100 ntBASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Gm16296-201ENSMUST00000159905 325 ntBASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Gm17150-201ENSMUST00000165577 381 ntBASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Tyms-ps-201ENSMUST00000219550 915 ntBASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Usp49Q6P9L4 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp49Q6P9L4 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Usp49Q6P9L4 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp49Q6P9L4 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Usp49Q6P9L4 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp49Q6P9L4 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp49Q6P9L4 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp49Q6P9L4 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp49Q6P9L4 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp49Q6P9L4 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp49Q6P9L4 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp49Q6P9L4 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp49Q6P9L4 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp49Q6P9L4 Gm23363-201ENSMUST00000175024 79 ntBASIC14.3□□□□□ -0.12
Usp49Q6P9L4 Gm4768-201ENSMUST00000206199 686 ntBASIC14.3□□□□□ -0.12
Usp49Q6P9L4 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Usp49Q6P9L4 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms