Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Trim40Q3UWA4 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Cd63-ps-201ENSMUST00000145417 875 ntBASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Gm27618-201ENSMUST00000183671 60 ntBASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Gm27321-201ENSMUST00000185021 205 ntBASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Gm37277-201ENSMUST00000194052 1111 ntBASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Gm18636-201ENSMUST00000218846 1066 ntBASIC12.01□□□□□ -0.49
Trim40Q3UWA4 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 AC154846.1-201ENSMUST00000226278 862 ntBASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Gm37324-201ENSMUST00000194500 4504 ntBASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Gm44094-201ENSMUST00000204703 2030 ntBASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim40Q3UWA4 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC12□□□□□ -0.49
Trim40Q3UWA4 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC12□□□□□ -0.49
Trim40Q3UWA4 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Gm42706-201ENSMUST00000199733 1910 ntBASIC12□□□□□ -0.49
Trim40Q3UWA4 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Gm13453-201ENSMUST00000118708 357 ntBASIC12□□□□□ -0.49
Trim40Q3UWA4 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC12□□□□□ -0.49
Trim40Q3UWA4 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Trim40Q3UWA4 Gm43703-201ENSMUST00000200523 763 ntBASIC12□□□□□ -0.49
Trim40Q3UWA4 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC12□□□□□ -0.49
Trim40Q3UWA4 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Trim40Q3UWA4 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC12□□□□□ -0.49
Trim40Q3UWA4 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Trim40Q3UWA4 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim40Q3UWA4 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Gm4204-201ENSMUST00000110798 1231 ntBASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC11.99□□□□□ -0.49
Trim40Q3UWA4 Gm38144-201ENSMUST00000192790 465 ntBASIC11.99□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 62.2 ms