Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Ercc3P49135 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Ercc3P49135 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ercc3P49135 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ercc3P49135 Snora73a-201ENSMUST00000082453 205 ntBASIC15.21■□□□□ 0.03
Ercc3P49135 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Ercc3P49135 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Ercc3P49135 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Ercc3P49135 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Ercc3P49135 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Ercc3P49135 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC15.21■□□□□ 0.02
Ercc3P49135 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Ercc3P49135 Gm15897-201ENSMUST00000117770 1486 ntBASIC15.2■□□□□ 0.02
Ercc3P49135 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC15.2■□□□□ 0.02
Ercc3P49135 Gm43579-201ENSMUST00000202387 1307 ntBASIC15.2■□□□□ 0.02
Ercc3P49135 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC15.2■□□□□ 0.02
Ercc3P49135 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Ercc3P49135 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Ercc3P49135 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Ercc3P49135 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Ercc3P49135 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Ercc3P49135 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Ercc3P49135 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
Ercc3P49135 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC15.2■□□□□ 0.02
Ercc3P49135 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Ercc3P49135 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC15.2■□□□□ 0.02
Ercc3P49135 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC15.2■□□□□ 0.02
Ercc3P49135 Gm22121-201ENSMUST00000175148 54 ntBASIC15.2■□□□□ 0.02
Ercc3P49135 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC15.2■□□□□ 0.02
Ercc3P49135 Gm19184-201ENSMUST00000196798 928 ntBASIC15.2■□□□□ 0.02
Ercc3P49135 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC15.2■□□□□ 0.02
Ercc3P49135 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Ercc3P49135 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC15.2■□□□□ 0.02
Ercc3P49135 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Ercc3P49135 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Ercc3P49135 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
Ercc3P49135 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
Ercc3P49135 Gm4768-201ENSMUST00000206199 686 ntBASIC15.19■□□□□ 0.02
Ercc3P49135 Gm4935-201ENSMUST00000221316 1198 ntBASIC15.19■□□□□ 0.02
Ercc3P49135 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Ercc3P49135 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC15.19■□□□□ 0.02
Ercc3P49135 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Ercc3P49135 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC15.19■□□□□ 0.02
Ercc3P49135 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ercc3P49135 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ercc3P49135 Gm8793-201ENSMUST00000183069 1303 ntBASIC15.18■□□□□ 0.02
Ercc3P49135 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC15.18■□□□□ 0.02
Ercc3P49135 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ercc3P49135 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ercc3P49135 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ercc3P49135 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC15.18■□□□□ 0.02
Ercc3P49135 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ercc3P49135 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ercc3P49135 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Ercc3P49135 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ercc3P49135 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC15.18■□□□□ 0.02
Ercc3P49135 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC15.18■□□□□ 0.02
Ercc3P49135 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ercc3P49135 Gm17420-201ENSMUST00000164753 153 ntBASIC15.18■□□□□ 0.02
Ercc3P49135 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC15.18■□□□□ 0.02
Ercc3P49135 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC15.18■□□□□ 0.02
Ercc3P49135 Gm18054-201ENSMUST00000207539 555 ntBASIC15.18■□□□□ 0.02
Ercc3P49135 Gm17823-201ENSMUST00000217830 1006 ntBASIC15.18■□□□□ 0.02
Ercc3P49135 CU024892.2-201ENSMUST00000224608 832 ntBASIC15.18■□□□□ 0.02
Ercc3P49135 AC140406.1-201ENSMUST00000226481 465 ntBASIC15.18■□□□□ 0.02
Ercc3P49135 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms