Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC10.46□□□□□ -0.73
Sdc1P18828 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC10.46□□□□□ -0.73
Sdc1P18828 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.73
Sdc1P18828 Gm34391-201ENSMUST00000203706 907 ntBASIC10.46□□□□□ -0.73
Sdc1P18828 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC10.46□□□□□ -0.73
Sdc1P18828 Gm8227-201ENSMUST00000223306 571 ntBASIC10.46□□□□□ -0.73
Sdc1P18828 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC10.46□□□□□ -0.73
Sdc1P18828 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Sdc1P18828 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Sdc1P18828 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC10.46□□□□□ -0.73
Sdc1P18828 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Sdc1P18828 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Sdc1P18828 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Sdc1P18828 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC10.46□□□□□ -0.74
Sdc1P18828 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
Sdc1P18828 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.74
Sdc1P18828 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Sdc1P18828 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Sdc1P18828 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC10.46□□□□□ -0.74
Sdc1P18828 AC211878.3-201ENSMUST00000222629 2018 ntBASIC10.46□□□□□ -0.74
Sdc1P18828 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.74
Sdc1P18828 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
Sdc1P18828 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC10.46□□□□□ -0.74
Sdc1P18828 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
Sdc1P18828 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Sdc1P18828 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.74
Sdc1P18828 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Sdc1P18828 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
Sdc1P18828 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.74
Sdc1P18828 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC10.45□□□□□ -0.74
Sdc1P18828 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Sdc1P18828 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC10.45□□□□□ -0.74
Sdc1P18828 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC10.45□□□□□ -0.74
Sdc1P18828 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC10.45□□□□□ -0.74
Sdc1P18828 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC10.45□□□□□ -0.74
Sdc1P18828 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC10.45□□□□□ -0.74
Sdc1P18828 Gm15427-201ENSMUST00000117288 531 ntBASIC10.45□□□□□ -0.74
Sdc1P18828 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC10.45□□□□□ -0.74
Sdc1P18828 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC10.45□□□□□ -0.74
Sdc1P18828 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC10.45□□□□□ -0.74
Sdc1P18828 Gm38114-201ENSMUST00000191877 1232 ntBASIC10.45□□□□□ -0.74
Sdc1P18828 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC10.45□□□□□ -0.74
Sdc1P18828 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Gm17330-201ENSMUST00000221047 165 ntBASIC10.45□□□□□ -0.74
Sdc1P18828 AC159295.1-201ENSMUST00000225326 940 ntBASIC10.45□□□□□ -0.74
Sdc1P18828 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.74
Sdc1P18828 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Sdc1P18828 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC10.45□□□□□ -0.74
Sdc1P18828 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Sdc1P18828 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Gm5475-202ENSMUST00000148928 2320 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Sdc1P18828 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC10.45□□□□□ -0.74
Sdc1P18828 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC10.45□□□□□ -0.74
Sdc1P18828 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Sdc1P18828 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Gm6157-201ENSMUST00000199935 1897 ntBASIC10.44□□□□□ -0.74
Sdc1P18828 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Pla2g15-201ENSMUST00000034377 2706 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Pnpla6-212ENSMUST00000208002 4444 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Cog3-203ENSMUST00000227473 4197 ntBASIC10.44□□□□□ -0.74
Sdc1P18828 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Sdc1P18828 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC10.44□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms