Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC10.38□□□□□ -0.75
Cdx1P18111 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Cdx1P18111 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC10.38□□□□□ -0.75
Cdx1P18111 Gm14127-201ENSMUST00000117906 678 ntBASIC10.38□□□□□ -0.75
Cdx1P18111 Gm14928-201ENSMUST00000120198 477 ntBASIC10.38□□□□□ -0.75
Cdx1P18111 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC10.38□□□□□ -0.75
Cdx1P18111 Gm18187-201ENSMUST00000196476 984 ntBASIC10.38□□□□□ -0.75
Cdx1P18111 Gm45195-201ENSMUST00000205597 1008 ntBASIC10.38□□□□□ -0.75
Cdx1P18111 AC156016.3-201ENSMUST00000228623 344 ntBASIC10.38□□□□□ -0.75
Cdx1P18111 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Cdx1P18111 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Cdx1P18111 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Cdx1P18111 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC10.38□□□□□ -0.75
Cdx1P18111 AC115735.4-201ENSMUST00000227460 1944 ntBASIC10.38□□□□□ -0.75
Cdx1P18111 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Cdx1P18111 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC10.38□□□□□ -0.75
Cdx1P18111 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdx1P18111 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC10.37□□□□□ -0.75
Cdx1P18111 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Cdx1P18111 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC10.37□□□□□ -0.75
Cdx1P18111 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC10.37□□□□□ -0.75
Cdx1P18111 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC10.37□□□□□ -0.75
Cdx1P18111 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC10.37□□□□□ -0.75
Cdx1P18111 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC10.37□□□□□ -0.75
Cdx1P18111 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC10.37□□□□□ -0.75
Cdx1P18111 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
Cdx1P18111 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Gm43365-201ENSMUST00000196522 2106 ntBASIC10.37□□□□□ -0.75
Cdx1P18111 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Cdx1P18111 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC10.37□□□□□ -0.75
Cdx1P18111 E030026E10Rik-201ENSMUST00000200395 2217 ntBASIC10.37□□□□□ -0.75
Cdx1P18111 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Cdx1P18111 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Cdx1P18111 Tcf21-202ENSMUST00000218002 1788 ntBASIC10.37□□□□□ -0.75
Cdx1P18111 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Cdx1P18111 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms