Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC10.58□□□□□ -0.72
Hmgb3O54879 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
Hmgb3O54879 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Hmgb3O54879 C4b-201ENSMUST00000069507 5379 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Gm27177-202ENSMUST00000183514 2703 ntBASIC10.57□□□□□ -0.72
Hmgb3O54879 Cacna2d4-201ENSMUST00000037434 5803 ntAPPRIS P3 TSL 2 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Ctnnd1-205ENSMUST00000111670 5047 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Ttll7-205ENSMUST00000170055 6075 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Gm24420-201ENSMUST00000176676 59 ntBASIC10.57□□□□□ -0.72
Hmgb3O54879 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Gm45683-201ENSMUST00000210825 1247 ntBASIC10.57□□□□□ -0.72
Hmgb3O54879 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Atg2a-201ENSMUST00000045351 6371 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
Hmgb3O54879 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Dync1h1-201ENSMUST00000018851 14342 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Tbl3-202ENSMUST00000126319 5226 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Hmgb3O54879 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
Hmgb3O54879 Rreb1-207ENSMUST00000128570 8436 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Hmgb3O54879 Prx-202ENSMUST00000098644 4841 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Gm18263-201ENSMUST00000220846 1928 ntBASIC10.56□□□□□ -0.72
Hmgb3O54879 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC10.56□□□□□ -0.72
Hmgb3O54879 Itga10-202ENSMUST00000119365 5035 ntAPPRIS P2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Clip1-203ENSMUST00000111561 5883 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Hmgb3O54879 Cfap74-209ENSMUST00000151083 5487 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Hmgb3O54879 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Hmgb3O54879 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC10.56□□□□□ -0.72
Hmgb3O54879 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Gm4913-201ENSMUST00000117075 1290 ntBASIC10.56□□□□□ -0.72
Hmgb3O54879 Gm15393-201ENSMUST00000120499 219 ntBASIC10.56□□□□□ -0.72
Hmgb3O54879 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
Hmgb3O54879 Gm43125-201ENSMUST00000201724 730 ntBASIC10.56□□□□□ -0.72
Hmgb3O54879 AC130671.1-201ENSMUST00000227384 1237 ntBASIC10.56□□□□□ -0.72
Hmgb3O54879 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
Hmgb3O54879 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC10.56□□□□□ -0.72
Hmgb3O54879 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC10.56□□□□□ -0.72
Hmgb3O54879 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Hmgb3O54879 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Zmynd8-221ENSMUST00000177633 5093 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Hmgb3O54879 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
Hmgb3O54879 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 98.2 ms