Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC12.53□□□□□ -0.4
Chd3B1AR17 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC12.53□□□□□ -0.4
Chd3B1AR17 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC12.53□□□□□ -0.4
Chd3B1AR17 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
Chd3B1AR17 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Chd3B1AR17 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC12.53□□□□□ -0.4
Chd3B1AR17 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Chd3B1AR17 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Chd3B1AR17 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Chd3B1AR17 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Chd3B1AR17 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Chd3B1AR17 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC12.52□□□□□ -0.4
Chd3B1AR17 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Chd3B1AR17 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Chd3B1AR17 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Chd3B1AR17 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC12.52□□□□□ -0.4
Chd3B1AR17 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Chd3B1AR17 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
Chd3B1AR17 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Chd3B1AR17 Gm39404-201ENSMUST00000216350 313 ntBASIC12.52□□□□□ -0.4
Chd3B1AR17 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Chd3B1AR17 CT025533.2-201ENSMUST00000228715 1248 ntBASIC12.52□□□□□ -0.4
Chd3B1AR17 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Chd3B1AR17 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC12.52□□□□□ -0.4
Chd3B1AR17 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Chd3B1AR17 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.4
Chd3B1AR17 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chd3B1AR17 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Chd3B1AR17 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chd3B1AR17 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chd3B1AR17 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Chd3B1AR17 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chd3B1AR17 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Chd3B1AR17 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC12.52□□□□□ -0.41
Chd3B1AR17 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chd3B1AR17 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Chd3B1AR17 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.41
Chd3B1AR17 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chd3B1AR17 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Chd3B1AR17 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chd3B1AR17 Gm14726-201ENSMUST00000120623 896 ntBASIC12.52□□□□□ -0.41
Chd3B1AR17 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
Chd3B1AR17 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Chd3B1AR17 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Chd3B1AR17 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC12.52□□□□□ -0.41
Chd3B1AR17 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC12.52□□□□□ -0.41
Chd3B1AR17 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC12.52□□□□□ -0.41
Chd3B1AR17 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chd3B1AR17 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chd3B1AR17 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chd3B1AR17 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Chd3B1AR17 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC12.52□□□□□ -0.41
Chd3B1AR17 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC12.52□□□□□ -0.41
Chd3B1AR17 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Chd3B1AR17 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Chd3B1AR17 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Chd3B1AR17 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
Chd3B1AR17 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Chd3B1AR17 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Chd3B1AR17 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Chd3B1AR17 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Chd3B1AR17 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Chd3B1AR17 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Chd3B1AR17 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC12.51□□□□□ -0.41
Chd3B1AR17 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC12.51□□□□□ -0.41
Chd3B1AR17 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC12.51□□□□□ -0.41
Chd3B1AR17 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Chd3B1AR17 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Chd3B1AR17 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Chd3B1AR17 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
Chd3B1AR17 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Chd3B1AR17 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Chd3B1AR17 Gm43364-201ENSMUST00000196046 3274 ntBASIC12.51□□□□□ -0.41
Chd3B1AR17 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC12.51□□□□□ -0.41
Chd3B1AR17 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Chd3B1AR17 Gm24255-201ENSMUST00000104481 128 ntBASIC12.51□□□□□ -0.41
Chd3B1AR17 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Chd3B1AR17 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC12.51□□□□□ -0.41
Chd3B1AR17 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Chd3B1AR17 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC12.51□□□□□ -0.41
Chd3B1AR17 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms