Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Gm13786-201ENSMUST00000122371 333 ntBASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Gm45331-201ENSMUST00000209868 554 ntBASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Gm45930-201ENSMUST00000221330 292 ntBASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Gm42853-201ENSMUST00000201273 1387 ntBASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cpsf3Q9QXK7 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Cpsf3Q9QXK7 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
Cpsf3Q9QXK7 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Cpsf3Q9QXK7 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Cpsf3Q9QXK7 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Cpsf3Q9QXK7 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Cpsf3Q9QXK7 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Cpsf3Q9QXK7 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Olfr284-202ENSMUST00000206647 966 ntBASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Gm24526-201ENSMUST00000082921 158 ntBASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Gm42928-201ENSMUST00000197338 3339 ntBASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Cpsf3Q9QXK7 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Mir1247-201ENSMUST00000116706 82 ntBASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Gm13492-201ENSMUST00000119772 665 ntBASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Gm13316-201ENSMUST00000140537 691 ntBASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Gm8801-201ENSMUST00000173255 1064 ntBASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 AC132317.1-201ENSMUST00000227227 962 ntBASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cpsf3Q9QXK7 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cpsf3Q9QXK7 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 67.8 ms