Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Gm27331-201ENSMUST00000183705 60 ntBASIC12.51□□□□□ -0.41
Msh4Q99MT2 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Gm45784-201ENSMUST00000188360 142 ntBASIC12.51□□□□□ -0.41
Msh4Q99MT2 AY702102-202ENSMUST00000194651 1173 ntBASIC12.51□□□□□ -0.41
Msh4Q99MT2 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Gm44064-201ENSMUST00000204964 1087 ntBASIC12.51□□□□□ -0.41
Msh4Q99MT2 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC12.51□□□□□ -0.41
Msh4Q99MT2 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 AC096628.2-201ENSMUST00000225443 1413 ntBASIC12.51□□□□□ -0.41
Msh4Q99MT2 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msh4Q99MT2 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Gm14660-201ENSMUST00000119809 575 ntBASIC12.5□□□□□ -0.41
Msh4Q99MT2 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC12.5□□□□□ -0.41
Msh4Q99MT2 Gm43438-201ENSMUST00000198133 379 ntBASIC12.5□□□□□ -0.41
Msh4Q99MT2 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Gm29705-201ENSMUST00000212598 474 ntBASIC12.5□□□□□ -0.41
Msh4Q99MT2 AC166349.1-201ENSMUST00000220866 695 ntBASIC12.5□□□□□ -0.41
Msh4Q99MT2 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msh4Q99MT2 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Gm42829-201ENSMUST00000198417 2585 ntBASIC12.49□□□□□ -0.41
Msh4Q99MT2 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Gm16202-201ENSMUST00000117532 544 ntBASIC12.49□□□□□ -0.41
Msh4Q99MT2 Gm11618-201ENSMUST00000117946 267 ntBASIC12.49□□□□□ -0.41
Msh4Q99MT2 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Gm27731-201ENSMUST00000185192 107 ntBASIC12.49□□□□□ -0.41
Msh4Q99MT2 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Msh4Q99MT2 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Gm40466-201ENSMUST00000212174 422 ntBASIC12.49□□□□□ -0.41
Msh4Q99MT2 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msh4Q99MT2 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms