Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Retreg1-206ENSMUST00000228306 1430 ntBASIC18.01■□□□□ 0.47
Usp47Q8BY87 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Gm14760-201ENSMUST00000121831 999 ntBASIC18.01■□□□□ 0.47
Usp47Q8BY87 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC18.01■□□□□ 0.47
Usp47Q8BY87 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Gm27320-201ENSMUST00000184892 109 ntBASIC18.01■□□□□ 0.47
Usp47Q8BY87 Gm6082-201ENSMUST00000215204 454 ntBASIC18.01■□□□□ 0.47
Usp47Q8BY87 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC18.01■□□□□ 0.47
Usp47Q8BY87 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC18■□□□□ 0.47
Usp47Q8BY87 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 AC154747.3-201ENSMUST00000224471 3470 ntBASIC18■□□□□ 0.47
Usp47Q8BY87 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Usp47Q8BY87 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC18■□□□□ 0.47
Usp47Q8BY87 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 Gm12749-201ENSMUST00000122138 1159 ntBASIC18■□□□□ 0.47
Usp47Q8BY87 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC18■□□□□ 0.47
Usp47Q8BY87 Gm4857-201ENSMUST00000192718 785 ntBASIC18■□□□□ 0.47
Usp47Q8BY87 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Usp47Q8BY87 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Usp47Q8BY87 Gm26035-201ENSMUST00000083065 308 ntBASIC18■□□□□ 0.47
Usp47Q8BY87 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC18■□□□□ 0.47
Usp47Q8BY87 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
Usp47Q8BY87 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC18■□□□□ 0.47
Usp47Q8BY87 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC18■□□□□ 0.47
Usp47Q8BY87 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC18■□□□□ 0.47
Usp47Q8BY87 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usp47Q8BY87 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Gm24231-201ENSMUST00000104315 133 ntBASIC17.99■□□□□ 0.47
Usp47Q8BY87 Gm13570-201ENSMUST00000140763 309 ntBASIC17.99■□□□□ 0.47
Usp47Q8BY87 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC17.99■□□□□ 0.47
Usp47Q8BY87 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Gm23119-201ENSMUST00000158610 140 ntBASIC17.99■□□□□ 0.47
Usp47Q8BY87 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Gm27023-201ENSMUST00000182372 285 ntBASIC17.99■□□□□ 0.47
Usp47Q8BY87 Gm38000-201ENSMUST00000192390 1215 ntBASIC17.99■□□□□ 0.47
Usp47Q8BY87 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Gm18615-201ENSMUST00000222919 1031 ntBASIC17.99■□□□□ 0.47
Usp47Q8BY87 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Gm44207-201ENSMUST00000204568 1424 ntBASIC17.99■□□□□ 0.47
Usp47Q8BY87 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usp47Q8BY87 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Usp47Q8BY87 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp47Q8BY87 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp47Q8BY87 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Usp47Q8BY87 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usp47Q8BY87 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Usp47Q8BY87 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC17.98■□□□□ 0.47
Usp47Q8BY87 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC17.98■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms