Protein–RNA interactions for Protein: Q6IRU2

Tpm4, Tropomyosin alpha-4 chain, mousemouse

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm4Q6IRU2 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Gm14057-201ENSMUST00000120631 482 ntBASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Gm45195-201ENSMUST00000205597 1008 ntBASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Gm28323-201ENSMUST00000186817 2499 ntBASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Tpm4Q6IRU2 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Gm15321-201ENSMUST00000121290 288 ntBASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 AC093022.5-201ENSMUST00000226841 1079 ntBASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC14.35□□□□□ -0.11
Tpm4Q6IRU2 Gm9755-201ENSMUST00000032981 1356 ntBASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Gm3365-201ENSMUST00000216296 1480 ntBASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Gm6447-201ENSMUST00000118905 835 ntBASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Mir7023-201ENSMUST00000185093 64 ntBASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 AC138604.1-201ENSMUST00000226969 739 ntBASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Tpm4Q6IRU2 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Tpm4Q6IRU2 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
Tpm4Q6IRU2 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Tpm4Q6IRU2 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms