Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Gm42840-201ENSMUST00000200303 2251 ntBASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Gm44758-201ENSMUST00000206096 2068 ntBASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Col28a1Q2UY11 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 CT025624.1-201ENSMUST00000224007 2700 ntBASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Gm43677-201ENSMUST00000198098 2378 ntBASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Gm9002-201ENSMUST00000178437 499 ntBASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Gm5035-201ENSMUST00000215581 927 ntBASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Gm17870-201ENSMUST00000219489 1174 ntBASIC12.48□□□□□ -0.41
Col28a1Q2UY11 AC238811.3-201ENSMUST00000225422 709 ntBASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Col28a1Q2UY11 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Gm6210-201ENSMUST00000204734 1942 ntBASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 AC154262.2-202ENSMUST00000225158 1331 ntBASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Gm11425-201ENSMUST00000119608 498 ntBASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Gm6007-201ENSMUST00000208170 823 ntBASIC12.47□□□□□ -0.41
Col28a1Q2UY11 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Col28a1Q2UY11 AC162801.1-201ENSMUST00000220612 198 ntBASIC12.47□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms