Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Mir7221-201ENSMUST00000184009 72 ntBASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gm18916-201ENSMUST00000198264 1246 ntBASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gm5869-201ENSMUST00000200248 1257 ntBASIC11.09□□□□□ -0.63
Nkx3-1P97436 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gm44967-201ENSMUST00000207047 631 ntBASIC11.09□□□□□ -0.63
Nkx3-1P97436 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gm9004-201ENSMUST00000218739 1222 ntBASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Nkx3-1P97436 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC11.08□□□□□ -0.63
Nkx3-1P97436 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Mir874-201ENSMUST00000104769 76 ntBASIC11.08□□□□□ -0.64
Nkx3-1P97436 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Gm15276-201ENSMUST00000145953 498 ntBASIC11.08□□□□□ -0.64
Nkx3-1P97436 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Gm19931-201ENSMUST00000198920 368 ntBASIC11.08□□□□□ -0.64
Nkx3-1P97436 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Gm9678-201ENSMUST00000198979 1149 ntBASIC11.08□□□□□ -0.64
Nkx3-1P97436 Rps4l-202ENSMUST00000204242 789 ntBASIC11.08□□□□□ -0.64
Nkx3-1P97436 Gm13097-201ENSMUST00000210722 397 ntBASIC11.08□□□□□ -0.64
Nkx3-1P97436 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Gm22058-201ENSMUST00000083393 310 ntBASIC11.08□□□□□ -0.64
Nkx3-1P97436 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Nkx3-1P97436 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Gm38094-201ENSMUST00000195864 2978 ntBASIC11.07□□□□□ -0.64
Nkx3-1P97436 Daam2-202ENSMUST00000224595 1926 ntBASIC11.07□□□□□ -0.64
Nkx3-1P97436 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Gm25214-201ENSMUST00000104573 129 ntBASIC11.07□□□□□ -0.64
Nkx3-1P97436 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC11.07□□□□□ -0.64
Nkx3-1P97436 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Nkx3-1P97436 Gm24990-201ENSMUST00000157406 323 ntBASIC11.07□□□□□ -0.64
Nkx3-1P97436 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC11.07□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 78.2 ms