Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC16.54■□□□□ 0.24
Col18a1P39061 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 1700001C02Rik-202ENSMUST00000114743 729 ntTSL 5 BASIC16.54■□□□□ 0.24
Col18a1P39061 Gm14807-201ENSMUST00000116640 983 ntBASIC16.54■□□□□ 0.24
Col18a1P39061 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC16.54■□□□□ 0.24
Col18a1P39061 Gm17070-201ENSMUST00000170463 784 ntBASIC16.54■□□□□ 0.24
Col18a1P39061 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC16.54■□□□□ 0.24
Col18a1P39061 Spink2-201ENSMUST00000065216 631 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Col18a1P39061 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Gm37131-201ENSMUST00000192502 1561 ntBASIC16.53■□□□□ 0.24
Col18a1P39061 Gm43677-201ENSMUST00000198098 2378 ntBASIC16.53■□□□□ 0.24
Col18a1P39061 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
Col18a1P39061 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Col18a1P39061 Gm14892-201ENSMUST00000117636 267 ntBASIC16.53■□□□□ 0.24
Col18a1P39061 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Gm10169-201ENSMUST00000121822 348 ntBASIC16.53■□□□□ 0.24
Col18a1P39061 Fcgr2b-203ENSMUST00000159688 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 AC238811.4-201ENSMUST00000178019 1246 ntBASIC16.53■□□□□ 0.24
Col18a1P39061 AC238940.3-201ENSMUST00000178830 1246 ntBASIC16.53■□□□□ 0.24
Col18a1P39061 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Col18a1P39061 Gm44647-201ENSMUST00000207402 428 ntBASIC16.53■□□□□ 0.24
Col18a1P39061 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col18a1P39061 Slc38a5-203ENSMUST00000115591 1853 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Col18a1P39061 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col18a1P39061 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col18a1P39061 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col18a1P39061 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col18a1P39061 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col18a1P39061 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col18a1P39061 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC16.52■□□□□ 0.24
Col18a1P39061 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC16.52■□□□□ 0.24
Col18a1P39061 Gm18776-201ENSMUST00000188833 654 ntBASIC16.52■□□□□ 0.24
Col18a1P39061 Gm44953-201ENSMUST00000208745 1286 ntBASIC16.52■□□□□ 0.24
Col18a1P39061 Retnla-201ENSMUST00000023329 598 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col18a1P39061 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col18a1P39061 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col18a1P39061 Gm37691-201ENSMUST00000192147 2573 ntBASIC16.52■□□□□ 0.24
Col18a1P39061 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Col18a1P39061 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col18a1P39061 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
Col18a1P39061 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col18a1P39061 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col18a1P39061 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col18a1P39061 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col18a1P39061 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col18a1P39061 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Col18a1P39061 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col18a1P39061 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col18a1P39061 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
Col18a1P39061 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
Col18a1P39061 Gm16876-201ENSMUST00000151945 760 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 Gm45716-203ENSMUST00000153734 644 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Col18a1P39061 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC16.51■□□□□ 0.23
Col18a1P39061 Gm9136-201ENSMUST00000193368 454 ntBASIC16.51■□□□□ 0.23
Col18a1P39061 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 C8g-202ENSMUST00000040042 1150 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 Olfr1339-201ENSMUST00000094832 948 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Col18a1P39061 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Col18a1P39061 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC16.51■□□□□ 0.23
Col18a1P39061 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col18a1P39061 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Col18a1P39061 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Col18a1P39061 Gm11502-201ENSMUST00000120917 1211 ntBASIC16.51■□□□□ 0.23
Col18a1P39061 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC16.51■□□□□ 0.23
Col18a1P39061 Gm44315-201ENSMUST00000203041 219 ntBASIC16.51■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms