Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC15.14■□□□□ 0.01
Col3a1P08121 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Col3a1P08121 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Col3a1P08121 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC15.14■□□□□ 0.01
Col3a1P08121 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC15.14■□□□□ 0.01
Col3a1P08121 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Col3a1P08121 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Acot6-202ENSMUST00000222921 3622 ntBASIC15.14■□□□□ 0.01
Col3a1P08121 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Col3a1P08121 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC15.14■□□□□ 0.01
Col3a1P08121 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Gm15782-201ENSMUST00000121073 445 ntBASIC15.14■□□□□ 0.01
Col3a1P08121 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC15.14■□□□□ 0.01
Col3a1P08121 Gm9022-201ENSMUST00000182482 992 ntBASIC15.14■□□□□ 0.01
Col3a1P08121 Gm28450-201ENSMUST00000187349 638 ntBASIC15.14■□□□□ 0.01
Col3a1P08121 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC15.14■□□□□ 0.01
Col3a1P08121 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col3a1P08121 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC15.13■□□□□ 0.01
Col3a1P08121 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Col3a1P08121 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Col3a1P08121 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
Col3a1P08121 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Col3a1P08121 Gm12380-201ENSMUST00000119012 544 ntBASIC15.13■□□□□ 0.01
Col3a1P08121 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC15.13■□□□□ 0.01
Col3a1P08121 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC15.13■□□□□ 0.01
Col3a1P08121 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC15.13■□□□□ 0.01
Col3a1P08121 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC15.13■□□□□ 0.01
Col3a1P08121 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col3a1P08121 Gm45342-201ENSMUST00000210903 1363 ntBASIC15.13■□□□□ 0.01
Col3a1P08121 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Col3a1P08121 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Gm18626-201ENSMUST00000221512 1409 ntBASIC15.12■□□□□ 0.01
Col3a1P08121 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC15.12■□□□□ 0.01
Col3a1P08121 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Gm16481-201ENSMUST00000119074 1227 ntBASIC15.12■□□□□ 0.01
Col3a1P08121 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Col3a1P08121 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC15.12■□□□□ 0.01
Col3a1P08121 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC15.12■□□□□ 0.01
Col3a1P08121 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC15.12■□□□□ 0.01
Col3a1P08121 Gm8959-201ENSMUST00000213150 571 ntBASIC15.12■□□□□ 0.01
Col3a1P08121 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 AC131330.1-201ENSMUST00000227814 1015 ntBASIC15.12■□□□□ 0.01
Col3a1P08121 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Col3a1P08121 Gm43045-201ENSMUST00000198725 2095 ntBASIC15.12■□□□□ 0.01
Col3a1P08121 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col3a1P08121 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Col3a1P08121 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Col3a1P08121 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
Col3a1P08121 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col3a1P08121 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Col3a1P08121 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC15.11■□□□□ 0.01
Col3a1P08121 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col3a1P08121 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col3a1P08121 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col3a1P08121 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC15.11■□□□□ 0.01
Col3a1P08121 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC15.11■□□□□ 0.01
Col3a1P08121 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Col3a1P08121 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Col3a1P08121 Gm43378-201ENSMUST00000199336 582 ntBASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 64.4 ms