Protein–RNA interactions for Protein: P04224

H-2 class II histocompatibility antigen, E-K alpha chain, mousemouse

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
P04224 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
P04224 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC11.28□□□□□ -0.6
P04224 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
P04224 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
P04224 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
P04224 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC11.28□□□□□ -0.6
P04224 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
P04224 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC11.28□□□□□ -0.6
P04224 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC11.28□□□□□ -0.6
P04224 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
P04224 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
P04224 D130051D11Rik-201ENSMUST00000189171 6188 ntBASIC11.28□□□□□ -0.6
P04224 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
P04224 Dclk2-202ENSMUST00000191752 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
P04224 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
P04224 Gm5859-201ENSMUST00000165401 2324 ntBASIC11.27□□□□□ -0.6
P04224 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
P04224 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
P04224 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
P04224 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
P04224 Tpx2-206ENSMUST00000164120 4365 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.6
P04224 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
P04224 Tnc-201ENSMUST00000030056 6833 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.6
P04224 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
P04224 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Ncor2-202ENSMUST00000086083 8575 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.61
P04224 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC11.27□□□□□ -0.61
P04224 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC11.27□□□□□ -0.61
P04224 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC11.27□□□□□ -0.61
P04224 Gm24513-201ENSMUST00000174964 138 ntBASIC11.27□□□□□ -0.61
P04224 Gm27622-201ENSMUST00000183779 60 ntBASIC11.27□□□□□ -0.61
P04224 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Parp14-201ENSMUST00000042665 7417 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC11.27□□□□□ -0.61
P04224 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
P04224 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC11.27□□□□□ -0.61
P04224 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
P04224 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
P04224 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
P04224 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC11.27□□□□□ -0.61
P04224 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
P04224 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
P04224 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
P04224 Gm37513-201ENSMUST00000194830 2268 ntBASIC11.26□□□□□ -0.61
P04224 Gm38378-201ENSMUST00000195153 2268 ntBASIC11.26□□□□□ -0.61
P04224 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC11.26□□□□□ -0.61
P04224 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC11.26□□□□□ -0.61
P04224 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC11.26□□□□□ -0.61
P04224 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC11.26□□□□□ -0.61
P04224 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC11.26□□□□□ -0.61
P04224 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC11.26□□□□□ -0.61
P04224 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC11.26□□□□□ -0.61
P04224 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC11.26□□□□□ -0.61
P04224 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Gm3695-201ENSMUST00000087222 1009 ntBASIC11.26□□□□□ -0.61
P04224 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
P04224 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC11.26□□□□□ -0.61
P04224 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC11.26□□□□□ -0.61
P04224 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC11.26□□□□□ -0.61
P04224 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
P04224 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms