Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Gm8798-201ENSMUST00000211877 1661 ntBASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Gm4984-201ENSMUST00000115987 360 ntBASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Gm24644-201ENSMUST00000157114 139 ntBASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Gm17150-201ENSMUST00000165577 381 ntBASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Gm29649-201ENSMUST00000185649 419 ntBASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 2210412B16Rik-201ENSMUST00000201281 498 ntBASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Gm7561-201ENSMUST00000211203 886 ntBASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Gm2824-203ENSMUST00000226189 1228 ntBASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Prpf40aQ9R1C7 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Prpf40aQ9R1C7 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Gm8131-201ENSMUST00000213783 1570 ntBASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 2810454H06Rik-201ENSMUST00000189942 3148 ntBASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Gm22331-201ENSMUST00000158066 136 ntBASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Gm42442-201ENSMUST00000197951 1133 ntBASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 AC125108.1-201ENSMUST00000218986 2330 ntBASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Prpf40aQ9R1C7 Gm42863-201ENSMUST00000197875 2958 ntBASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Gm45684-201ENSMUST00000210244 1571 ntBASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC14.13□□□□□ -0.15
Prpf40aQ9R1C7 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms