Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trim39Q9ESN2 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim39Q9ESN2 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Trim39Q9ESN2 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Trim39Q9ESN2 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim39Q9ESN2 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim39Q9ESN2 Gm4782-201ENSMUST00000168705 2046 ntBASIC12.08□□□□□ -0.48
Trim39Q9ESN2 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trim39Q9ESN2 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim39Q9ESN2 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trim39Q9ESN2 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trim39Q9ESN2 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Gm10327-201ENSMUST00000105222 1002 ntBASIC12.07□□□□□ -0.48
Trim39Q9ESN2 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Tbata-210ENSMUST00000151886 915 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Gm37917-201ENSMUST00000194711 392 ntBASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Gm43423-201ENSMUST00000198390 2094 ntBASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Gm26540-201ENSMUST00000181858 1310 ntTSL 5 BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trim39Q9ESN2 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Gm12341-201ENSMUST00000119724 503 ntBASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Gm29608-201ENSMUST00000190444 463 ntBASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 AL593843.1-201ENSMUST00000195891 145 ntBASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Gm19817-201ENSMUST00000199764 2132 ntBASIC12.06□□□□□ -0.48
Trim39Q9ESN2 AC135669.1-201ENSMUST00000213585 412 ntBASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trim39Q9ESN2 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
Trim39Q9ESN2 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Trim39Q9ESN2 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Trim39Q9ESN2 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms