Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Gm27437-201ENSMUST00000183429 107 ntBASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Gm45484-201ENSMUST00000210310 1141 ntBASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Gm17870-201ENSMUST00000219489 1174 ntBASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Gm19220-201ENSMUST00000222682 803 ntBASIC12.69□□□□□ -0.38
Lima1Q9ERG0 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 AC154527.2-201ENSMUST00000225256 1466 ntBASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lima1Q9ERG0 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Mir6977-201ENSMUST00000184960 64 ntBASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Gm28631-201ENSMUST00000190740 334 ntBASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Gm38144-201ENSMUST00000192790 465 ntBASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 AC192088.1-201ENSMUST00000227561 301 ntBASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Gm6210-201ENSMUST00000204734 1942 ntBASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lima1Q9ERG0 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Gm7488-201ENSMUST00000117148 684 ntBASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC12.67□□□□□ -0.38
Lima1Q9ERG0 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC12.67□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 74.2 ms