Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Ddx56Q9D0R4 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Ddx56Q9D0R4 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Gm5638-201ENSMUST00000118618 1258 ntBASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Gm17208-201ENSMUST00000168388 535 ntBASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Gm22121-201ENSMUST00000175148 54 ntBASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 AC140375.2-201ENSMUST00000225283 584 ntBASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Mir339-201ENSMUST00000083659 96 ntBASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
Ddx56Q9D0R4 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Gm14921-201ENSMUST00000118643 908 ntBASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Gm5896-201ENSMUST00000189662 1024 ntBASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Gm8099-201ENSMUST00000200510 742 ntBASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Gm38385-201ENSMUST00000194454 2351 ntBASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Ddx56Q9D0R4 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Zscan30-202ENSMUST00000224144 1458 ntBASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Ddx56Q9D0R4 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC13.5□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 64.4 ms