Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Gm6458-201ENSMUST00000211573 635 ntBASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Ushbp1Q8R370 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Gm13342-201ENSMUST00000121055 207 ntBASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Gm43118-201ENSMUST00000199149 775 ntBASIC14.41□□□□□ -0.1
Ushbp1Q8R370 AC133598.1-201ENSMUST00000224327 660 ntBASIC14.41□□□□□ -0.1
Ushbp1Q8R370 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ushbp1Q8R370 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Gm28323-201ENSMUST00000186817 2499 ntBASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Gm44364-201ENSMUST00000198368 141 ntBASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ushbp1Q8R370 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
Ushbp1Q8R370 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Gm13369-201ENSMUST00000119442 987 ntBASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC14.39□□□□□ -0.11
Ushbp1Q8R370 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC14.39□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 67.6 ms