Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Kcnk16-202ENSMUST00000225596 2127 ntBASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Gm27682-201ENSMUST00000183930 110 ntBASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Gm27243-201ENSMUST00000183964 521 ntBASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Gm37008-201ENSMUST00000195712 319 ntBASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Vps53Q8CCB4 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Gm6161-201ENSMUST00000121942 1102 ntBASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Gm6254-201ENSMUST00000168178 1072 ntBASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Gm6153-201ENSMUST00000172004 1058 ntBASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Gm27501-201ENSMUST00000183599 107 ntBASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Gm42627-201ENSMUST00000197347 224 ntBASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Gm5641-202ENSMUST00000198699 1080 ntBASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 CT573086.1-201ENSMUST00000227202 1074 ntBASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 AC096628.2-201ENSMUST00000225443 1413 ntBASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Vps53Q8CCB4 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Gm43321-201ENSMUST00000198897 2409 ntBASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Gm11400-201ENSMUST00000120853 1214 ntBASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Mir8109-201ENSMUST00000184375 117 ntBASIC14.96□□□□□ -0.01
Vps53Q8CCB4 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Vps53Q8CCB4 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms