Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Gm38094-201ENSMUST00000195864 2978 ntBASIC18.04■□□□□ 0.48
Usp47Q8BY87 Gm8862-201ENSMUST00000198379 1346 ntBASIC18.04■□□□□ 0.48
Usp47Q8BY87 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Gm14999-201ENSMUST00000121039 624 ntBASIC18.04■□□□□ 0.48
Usp47Q8BY87 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Rmrp-201ENSMUST00000157463 271 ntBASIC18.04■□□□□ 0.48
Usp47Q8BY87 Gm26956-201ENSMUST00000182176 986 ntBASIC18.04■□□□□ 0.48
Usp47Q8BY87 Gm8885-201ENSMUST00000189382 598 ntBASIC18.04■□□□□ 0.48
Usp47Q8BY87 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 AL732506.1-201ENSMUST00000226420 281 ntBASIC18.04■□□□□ 0.48
Usp47Q8BY87 AC113031.8-201ENSMUST00000227856 631 ntBASIC18.04■□□□□ 0.48
Usp47Q8BY87 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usp47Q8BY87 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Gm7002-201ENSMUST00000221386 2165 ntBASIC18.03■□□□□ 0.48
Usp47Q8BY87 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Gm14832-201ENSMUST00000121289 322 ntBASIC18.03■□□□□ 0.48
Usp47Q8BY87 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Gm8494-201ENSMUST00000178171 1233 ntBASIC18.03■□□□□ 0.48
Usp47Q8BY87 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Gm31256-201ENSMUST00000194705 506 ntBASIC18.03■□□□□ 0.48
Usp47Q8BY87 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Gm8712-201ENSMUST00000221090 701 ntBASIC18.03■□□□□ 0.48
Usp47Q8BY87 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Usp47Q8BY87 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Usp47Q8BY87 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp47Q8BY87 Gm28323-201ENSMUST00000186817 2499 ntBASIC18.02■□□□□ 0.48
Usp47Q8BY87 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Usp47Q8BY87 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Usp47Q8BY87 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp47Q8BY87 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp47Q8BY87 Gm2673-201ENSMUST00000120958 1608 ntBASIC18.02■□□□□ 0.48
Usp47Q8BY87 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp47Q8BY87 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp47Q8BY87 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Usp47Q8BY87 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp47Q8BY87 Gm4864-201ENSMUST00000219894 1461 ntBASIC18.02■□□□□ 0.48
Usp47Q8BY87 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usp47Q8BY87 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Usp47Q8BY87 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Usp47Q8BY87 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC18.02■□□□□ 0.47
Usp47Q8BY87 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Usp47Q8BY87 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Usp47Q8BY87 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Usp47Q8BY87 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Usp47Q8BY87 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Usp47Q8BY87 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
Usp47Q8BY87 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Usp47Q8BY87 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC18.02■□□□□ 0.47
Usp47Q8BY87 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usp47Q8BY87 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms