Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC14.04□□□□□ -0.16
Cln3Q61124 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cln3Q61124 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Cln3Q61124 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC14.03□□□□□ -0.16
Cln3Q61124 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Cln3Q61124 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Cln3Q61124 Gm5863-201ENSMUST00000121760 1008 ntBASIC14.03□□□□□ -0.16
Cln3Q61124 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Gm42937-201ENSMUST00000197360 752 ntBASIC14.03□□□□□ -0.16
Cln3Q61124 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC14.03□□□□□ -0.16
Cln3Q61124 Gm2594-201ENSMUST00000214774 742 ntBASIC14.03□□□□□ -0.16
Cln3Q61124 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC14.03□□□□□ -0.16
Cln3Q61124 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC14.03□□□□□ -0.16
Cln3Q61124 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Cln3Q61124 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC14.03□□□□□ -0.16
Cln3Q61124 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cln3Q61124 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cln3Q61124 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC14.02□□□□□ -0.16
Cln3Q61124 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cln3Q61124 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cln3Q61124 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cln3Q61124 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Cln3Q61124 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cln3Q61124 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cln3Q61124 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC14.02□□□□□ -0.16
Cln3Q61124 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Cln3Q61124 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cln3Q61124 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cln3Q61124 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cln3Q61124 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cln3Q61124 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Cln3Q61124 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cln3Q61124 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cln3Q61124 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cln3Q61124 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Cln3Q61124 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC14.02□□□□□ -0.17
Cln3Q61124 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Cln3Q61124 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cln3Q61124 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Cln3Q61124 Gm12314-201ENSMUST00000118104 538 ntBASIC14.02□□□□□ -0.17
Cln3Q61124 Gm12286-201ENSMUST00000119246 1002 ntBASIC14.02□□□□□ -0.17
Cln3Q61124 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cln3Q61124 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cln3Q61124 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC14.02□□□□□ -0.17
Cln3Q61124 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.17
Cln3Q61124 Gm43378-201ENSMUST00000199336 582 ntBASIC14.02□□□□□ -0.17
Cln3Q61124 Gm45598-202ENSMUST00000210719 986 ntBASIC14.02□□□□□ -0.17
Cln3Q61124 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Cln3Q61124 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cln3Q61124 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cln3Q61124 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cln3Q61124 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cln3Q61124 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cln3Q61124 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cln3Q61124 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.17
Cln3Q61124 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cln3Q61124 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC14.02□□□□□ -0.17
Cln3Q61124 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cln3Q61124 Acot6-202ENSMUST00000222921 3622 ntBASIC14.02□□□□□ -0.17
Cln3Q61124 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cln3Q61124 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Cln3Q61124 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cln3Q61124 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cln3Q61124 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cln3Q61124 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cln3Q61124 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cln3Q61124 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Cln3Q61124 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cln3Q61124 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Cln3Q61124 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Cln3Q61124 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Cln3Q61124 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cln3Q61124 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cln3Q61124 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cln3Q61124 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 62.4 ms