Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC19.42■□□□□ 0.7
Cux1P53564 Ginm1-202ENSMUST00000065124 300 ntBASIC19.42■□□□□ 0.7
Cux1P53564 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Cux1P53564 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC19.42■□□□□ 0.7
Cux1P53564 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Cux1P53564 Gm14150-201ENSMUST00000122404 1354 ntBASIC19.42■□□□□ 0.7
Cux1P53564 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC19.42■□□□□ 0.7
Cux1P53564 Gm37795-201ENSMUST00000194216 2459 ntBASIC19.42■□□□□ 0.7
Cux1P53564 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cux1P53564 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cux1P53564 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Cux1P53564 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cux1P53564 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC19.42■□□□□ 0.7
Cux1P53564 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cux1P53564 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC19.42■□□□□ 0.7
Cux1P53564 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cux1P53564 Gm7049-201ENSMUST00000223520 1712 ntBASIC19.42■□□□□ 0.7
Cux1P53564 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cux1P53564 Gm15131-201ENSMUST00000119124 595 ntBASIC19.41■□□□□ 0.7
Cux1P53564 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Cux1P53564 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC19.41■□□□□ 0.7
Cux1P53564 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC19.41■□□□□ 0.7
Cux1P53564 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC19.41■□□□□ 0.7
Cux1P53564 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
Cux1P53564 AC135469.1-201ENSMUST00000225984 772 ntBASIC19.41■□□□□ 0.7
Cux1P53564 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cux1P53564 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC19.41■□□□□ 0.7
Cux1P53564 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Cux1P53564 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cux1P53564 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cux1P53564 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cux1P53564 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cux1P53564 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC19.41■□□□□ 0.7
Cux1P53564 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cux1P53564 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cux1P53564 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC19.41■□□□□ 0.7
Cux1P53564 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cux1P53564 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cux1P53564 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cux1P53564 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cux1P53564 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Cux1P53564 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cux1P53564 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cux1P53564 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cux1P53564 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cux1P53564 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cux1P53564 Gm28719-201ENSMUST00000187779 1757 ntBASIC19.4■□□□□ 0.7
Cux1P53564 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cux1P53564 Gm42840-201ENSMUST00000200303 2251 ntBASIC19.4■□□□□ 0.7
Cux1P53564 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cux1P53564 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cux1P53564 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cux1P53564 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cux1P53564 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cux1P53564 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cux1P53564 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC19.4■□□□□ 0.7
Cux1P53564 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cux1P53564 Gm9279-201ENSMUST00000223175 1606 ntBASIC19.4■□□□□ 0.7
Cux1P53564 Gm5385-201ENSMUST00000118988 1559 ntBASIC19.4■□□□□ 0.7
Cux1P53564 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cux1P53564 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC19.4■□□□□ 0.7
Cux1P53564 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC19.4■□□□□ 0.7
Cux1P53564 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
Cux1P53564 Gm9540-201ENSMUST00000188230 478 ntBASIC19.4■□□□□ 0.7
Cux1P53564 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC19.4■□□□□ 0.7
Cux1P53564 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC19.4■□□□□ 0.7
Cux1P53564 Gm10371-202ENSMUST00000228010 1081 ntBASIC19.4■□□□□ 0.7
Cux1P53564 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cux1P53564 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cux1P53564 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Cux1P53564 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Cux1P53564 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC19.39■□□□□ 0.7
Cux1P53564 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Cux1P53564 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Cux1P53564 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Cux1P53564 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC19.39■□□□□ 0.7
Cux1P53564 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cux1P53564 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Cux1P53564 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cux1P53564 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
Cux1P53564 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cux1P53564 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Cux1P53564 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cux1P53564 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC19.39■□□□□ 0.69
Cux1P53564 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC19.39■□□□□ 0.69
Cux1P53564 Gm15595-201ENSMUST00000120840 961 ntBASIC19.39■□□□□ 0.69
Cux1P53564 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cux1P53564 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC19.39■□□□□ 0.69
Cux1P53564 AC093022.5-201ENSMUST00000226841 1079 ntBASIC19.39■□□□□ 0.69
Cux1P53564 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC19.39■□□□□ 0.69
Cux1P53564 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Cux1P53564 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cux1P53564 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cux1P53564 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cux1P53564 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Cux1P53564 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Cux1P53564 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Cux1P53564 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Cux1P53564 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC19.38■□□□□ 0.69
Cux1P53564 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 62.6 ms