Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC14.88□□□□□ -0.03
Traf1P39428 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC14.88□□□□□ -0.03
Traf1P39428 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Traf1P39428 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Traf1P39428 Gm12502-201ENSMUST00000120197 444 ntBASIC14.88□□□□□ -0.03
Traf1P39428 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
Traf1P39428 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC14.88□□□□□ -0.03
Traf1P39428 Gm21769-201ENSMUST00000211922 111 ntBASIC14.88□□□□□ -0.03
Traf1P39428 Cts7-204ENSMUST00000225321 1257 ntBASIC14.88□□□□□ -0.03
Traf1P39428 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Traf1P39428 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Traf1P39428 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Traf1P39428 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Traf1P39428 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
Traf1P39428 Gm40377-201ENSMUST00000204604 2015 ntBASIC14.88□□□□□ -0.03
Traf1P39428 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Traf1P39428 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Traf1P39428 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Traf1P39428 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Traf1P39428 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC14.88□□□□□ -0.03
Traf1P39428 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Traf1P39428 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Traf1P39428 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Traf1P39428 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC14.87□□□□□ -0.03
Traf1P39428 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC14.87□□□□□ -0.03
Traf1P39428 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Traf1P39428 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Traf1P39428 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
Traf1P39428 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Traf1P39428 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Traf1P39428 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
Traf1P39428 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Traf1P39428 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC14.87□□□□□ -0.03
Traf1P39428 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC14.87□□□□□ -0.03
Traf1P39428 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Gm23363-201ENSMUST00000175024 79 ntBASIC14.87□□□□□ -0.03
Traf1P39428 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Traf1P39428 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC14.87□□□□□ -0.03
Traf1P39428 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Gm5904-201ENSMUST00000210286 865 ntBASIC14.87□□□□□ -0.03
Traf1P39428 AC132384.14-201ENSMUST00000219346 1147 ntBASIC14.87□□□□□ -0.03
Traf1P39428 Morn2-202ENSMUST00000227729 656 ntBASIC14.87□□□□□ -0.03
Traf1P39428 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Gm38157-201ENSMUST00000194178 1698 ntBASIC14.87□□□□□ -0.03
Traf1P39428 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Traf1P39428 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Traf1P39428 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Traf1P39428 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
Traf1P39428 Snord83b-201ENSMUST00000104546 94 ntBASIC14.86□□□□□ -0.03
Traf1P39428 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Traf1P39428 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC14.86□□□□□ -0.03
Traf1P39428 Gm13492-201ENSMUST00000119772 665 ntBASIC14.86□□□□□ -0.03
Traf1P39428 Gm14704-201ENSMUST00000120300 874 ntBASIC14.86□□□□□ -0.03
Traf1P39428 Gm14381-201ENSMUST00000122105 414 ntBASIC14.86□□□□□ -0.03
Traf1P39428 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC14.86□□□□□ -0.03
Traf1P39428 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC14.86□□□□□ -0.03
Traf1P39428 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC14.86□□□□□ -0.03
Traf1P39428 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC14.86□□□□□ -0.03
Traf1P39428 Gm2991-201ENSMUST00000173338 480 ntBASIC14.86□□□□□ -0.03
Traf1P39428 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
Traf1P39428 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC14.86□□□□□ -0.03
Traf1P39428 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC14.86□□□□□ -0.03
Traf1P39428 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC14.86□□□□□ -0.03
Traf1P39428 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Traf1P39428 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC14.86□□□□□ -0.03
Traf1P39428 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC14.86□□□□□ -0.03
Traf1P39428 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Traf1P39428 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms