Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col18a1P39061 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col18a1P39061 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Col18a1P39061 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col18a1P39061 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col18a1P39061 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col18a1P39061 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
Col18a1P39061 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col18a1P39061 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC16.57■□□□□ 0.24
Col18a1P39061 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col18a1P39061 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col18a1P39061 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col18a1P39061 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col18a1P39061 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col18a1P39061 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Col18a1P39061 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col18a1P39061 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC16.57■□□□□ 0.24
Col18a1P39061 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col18a1P39061 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
Col18a1P39061 Opn1mw-202ENSMUST00000101457 1233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col18a1P39061 Gm5638-201ENSMUST00000118618 1258 ntBASIC16.57■□□□□ 0.24
Col18a1P39061 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC16.57■□□□□ 0.24
Col18a1P39061 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC16.57■□□□□ 0.24
Col18a1P39061 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col18a1P39061 Gm44506-201ENSMUST00000206278 965 ntBASIC16.57■□□□□ 0.24
Col18a1P39061 AC154305.4-201ENSMUST00000224520 614 ntBASIC16.57■□□□□ 0.24
Col18a1P39061 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col18a1P39061 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col18a1P39061 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Col18a1P39061 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col18a1P39061 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col18a1P39061 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col18a1P39061 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC16.57■□□□□ 0.24
Col18a1P39061 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col18a1P39061 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC16.56■□□□□ 0.24
Col18a1P39061 Gm44711-201ENSMUST00000205414 1264 ntBASIC16.56■□□□□ 0.24
Col18a1P39061 Gm18514-201ENSMUST00000218980 436 ntBASIC16.56■□□□□ 0.24
Col18a1P39061 AC112146.1-201ENSMUST00000221641 733 ntTSL 3 BASIC16.56■□□□□ 0.24
Col18a1P39061 Gm14005-208ENSMUST00000223654 681 ntBASIC16.56■□□□□ 0.24
Col18a1P39061 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
Col18a1P39061 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col18a1P39061 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Col18a1P39061 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col18a1P39061 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col18a1P39061 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col18a1P39061 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC16.56■□□□□ 0.24
Col18a1P39061 Ccdc90b-202ENSMUST00000085017 1494 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col18a1P39061 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col18a1P39061 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col18a1P39061 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col18a1P39061 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC16.56■□□□□ 0.24
Col18a1P39061 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Col18a1P39061 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col18a1P39061 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col18a1P39061 AC034099.1-202ENSMUST00000133843 833 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Col18a1P39061 Zmiz1os1-202ENSMUST00000225188 1223 ntBASIC16.56■□□□□ 0.24
Col18a1P39061 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col18a1P39061 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col18a1P39061 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Lta-201ENSMUST00000025266 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC16.55■□□□□ 0.24
Col18a1P39061 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Gm43752-201ENSMUST00000198475 697 ntBASIC16.55■□□□□ 0.24
Col18a1P39061 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Gm13539-202ENSMUST00000211245 552 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Col18a1P39061 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC16.55■□□□□ 0.24
Col18a1P39061 Nmi-201ENSMUST00000028314 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col18a1P39061 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 Ice2-202ENSMUST00000117246 1201 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 Gm15004-201ENSMUST00000119192 630 ntBASIC16.54■□□□□ 0.24
Col18a1P39061 Gm21987-201ENSMUST00000119704 456 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
Col18a1P39061 Gm13965-201ENSMUST00000154834 576 ntTSL 3 BASIC16.54■□□□□ 0.24
Col18a1P39061 Gm6855-201ENSMUST00000206307 790 ntBASIC16.54■□□□□ 0.24
Col18a1P39061 Gm4811-201ENSMUST00000220879 1220 ntBASIC16.54■□□□□ 0.24
Col18a1P39061 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Col18a1P39061 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Col18a1P39061 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col18a1P39061 AC122314.1-201ENSMUST00000223056 2239 ntBASIC16.54■□□□□ 0.24
Col18a1P39061 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms